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1K6Q
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANTIBODY FAB FRAGMENT D3
Authors
:
K. Faelber, R. F. Kelley, D. Kirchhofer, Y. A. Muller
Date
:
17 Oct 01 (Deposition) - 17 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : H,L
Biol. Unit 1: H,L (1x)
Keywords
:
Antigen-Antibody Recognition, Crystal Structure, Blood Coagulation, Tissue Factor, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Faelber, R. F. Kelley, D. Kirchhofer, Y. A. Muller
The Crystal Structure Of Murine Fab D3 At 2. 4 A Resolution In Comparison With The Humanised Fab D3H44 (1. 85A) Provides Structural Insight Into The Humanisation Process Of The D3 Anti-Tissue Factor Antibody
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1k6qh2 (H:118-216)
2a: SCOP_d1k6ql2 (L:108-210)
3a: SCOP_d1k6qh1 (H:1-117)
4a: SCOP_d1k6ql1 (L:1-107)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1k6qh2
H:118-216
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1k6ql2
L:108-210
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]
(31)
3a
d1k6qh1
H:1-117
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1k6ql1
L:1-107
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1k6qL02 (L:109-209)
1b: CATH_1k6qH02 (H:118-214)
1c: CATH_1k6qH01 (H:1-117)
1d: CATH_1k6qL01 (L:1-108)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1k6qL02
L:109-209
1b
1k6qH02
H:118-214
1c
1k6qH01
H:1-117
1d
1k6qL01
L:1-108
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