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1K6M
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (153 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN LIVER 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2, 6-BISPHOSPHATASE
Authors
:
Y. H. Lee, Y. Li, K. Uyeda, C. A. Hasemann
Date
:
16 Oct 01 (Deposition) - 11 Dec 02 (Release) - 07 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Tissue Differentiation, Isoform, Domain Stability, Transferase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. H. Lee, Y. Li, K. Uyeda, C. A. Hasemann
Tissue-Specific Structure/Function Differentiation Of The Liver Isoform Of 6-Phosphofructo-2-Kinase/Fructose-2, 6-Bisphosphatase.
J. Biol. Chem. V. 278 523 2003
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
1b: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AGS
2
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
PO4
4
Ligand/Ion
PHOSPHATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:257 , HIS A:258 , ASN A:264 , ARG A:307 , GLU A:327 , HIS A:392 , GLN A:393 , HOH A:742
BINDING SITE FOR RESIDUE PO4 A 501
2
AC2
SOFTWARE
TYR A:338 , ARG A:352 , LYS A:356 , TYR A:367 , GLN A:393 , ARG A:397 , HOH A:637 , HOH A:639 , HOH A:664
BINDING SITE FOR RESIDUE PO4 A 502
3
AC3
SOFTWARE
ALA A:51 , ARG A:52 , GLY A:53 , LYS A:54 , THR A:55 , TYR A:56 , ASP A:130 , SER A:158 , ASN A:169 , GLN A:172 , VAL A:173 , LYS A:174 , VAL A:222 , VAL A:248 , TYR A:429 , HOH A:603 , HOH A:658
BINDING SITE FOR RESIDUE AGS A 503
4
AC4
SOFTWARE
ARG B:257 , HIS B:258 , ASN B:264 , ARG B:307 , GLU B:327 , HIS B:392 , GLN B:393 , HOH B:613 , HOH B:636
BINDING SITE FOR RESIDUE PO4 B 501
5
AC5
SOFTWARE
TYR B:338 , ARG B:352 , LYS B:356 , TYR B:367 , GLN B:393 , ARG B:397 , HOH B:608 , HOH B:734
BINDING SITE FOR RESIDUE PO4 B 502
6
AC6
SOFTWARE
ALA B:51 , ARG B:52 , GLY B:53 , LYS B:54 , THR B:55 , TYR B:56 , ASP B:130 , SER B:158 , ASN B:169 , GLN B:172 , VAL B:173 , LYS B:174 , VAL B:222 , TYR B:429 , HOH B:614 , HOH B:628 , HOH B:646 , HOH B:647 , HOH B:684
BINDING SITE FOR RESIDUE AGS B 503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PG_MUTASE (A:255-264,B:255-264)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PG_MUTASE
PS00175
Phosphoglycerate mutase family phosphohistidine signature.
F261_HUMAN
256-265
2
A:255-264
B:255-264
[
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Exons
(13, 26)
Info
All Exons
Exon 1.2 (A:39-74 | B:39-74)
Exon 1.3a (A:74-105 | B:74-105)
Exon 1.4 (A:105-127 | B:105-127)
Exon 1.5 (A:128-152 | B:128-152)
Exon 1.6 (A:153-171 | B:153-171)
Exon 1.7 (A:172-212 | B:172-212)
Exon 1.8 (A:212-281 | B:212-281)
Exon 1.9 (A:282-330 | B:282-330)
Exon 1.10 (A:331-365 | B:331-365)
Exon 1.11 (A:366-409 | B:366-409)
Exon 1.12 (A:409-430 | B:409-430)
Exon 1.13 (A:430-451 | B:430-451)
Exon 1.14b (A:452-470 | B:452-470)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3a
03: Boundary 1.3a/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14b
14: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000375006
1
ENSE00001039642
X:55020511-55020344
168
F261_HUMAN
1-33
33
0
-
-
1.2
ENST00000375006
2
ENSE00001278630
X:54989815-54989690
126
F261_HUMAN
33-75
43
2
A:39-74
B:39-74
36
36
1.3a
ENST00000375006
3a
ENSE00001138192
X:54987350-54987257
94
F261_HUMAN
75-106
32
2
A:74-105
B:74-105
32
32
1.4
ENST00000375006
4
ENSE00001138182
X:54986326-54986260
67
F261_HUMAN
106-128
23
2
A:105-127
B:105-127
23
23
1.5
ENST00000375006
5
ENSE00001138173
X:54985358-54985284
75
F261_HUMAN
129-153
25
2
A:128-152
B:128-152
25
25
1.6
ENST00000375006
6
ENSE00001138167
X:54984795-54984739
57
F261_HUMAN
154-172
19
2
A:153-171
B:153-171
19
19
1.7
ENST00000375006
7
ENSE00001039648
X:54982707-54982586
122
F261_HUMAN
173-213
41
2
A:172-212
B:172-212
41
41
1.8
ENST00000375006
8
ENSE00001039652
X:54978545-54978338
208
F261_HUMAN
213-282
70
2
A:212-281
B:212-281
70
70
1.9
ENST00000375006
9
ENSE00001138149
X:54975654-54975508
147
F261_HUMAN
283-331
49
2
A:282-330
B:282-330
49
49
1.10
ENST00000375006
10
ENSE00001672492
X:54971976-54971872
105
F261_HUMAN
332-366
35
2
A:331-365
B:331-365
35
35
1.11
ENST00000375006
11
ENSE00001613745
X:54964157-54964028
130
F261_HUMAN
367-410
44
2
A:366-409
B:366-409
44
44
1.12
ENST00000375006
12
ENSE00000671730
X:54961442-54961380
63
F261_HUMAN
410-431
22
2
A:409-430
B:409-430
22
22
1.13
ENST00000375006
13
ENSE00001666471
X:54960318-54960254
65
F261_HUMAN
431-452
22
2
A:430-451
B:430-451
22
22
1.14b
ENST00000375006
14b
ENSE00001908241
X:54959895-54959394
502
F261_HUMAN
453-471
19
2
A:452-470
B:452-470
19
19
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1k6ma1 (A:39-251)
1b: SCOP_d1k6mb1 (B:39-251)
2a: SCOP_d1k6ma2 (A:252-470)
2b: SCOP_d1k6mb2 (B:252-470)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
(4)
Protein domain
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1k6ma1
A:39-251
1b
d1k6mb1
B:39-251
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
(9)
Protein domain
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1k6ma2
A:252-470
2b
d1k6mb2
B:252-470
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1k6mA01 (A:40-244)
1b: CATH_1k6mB01 (B:40-244)
2a: CATH_1k6mA02 (A:249-469)
2b: CATH_1k6mB02 (B:249-469)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1k6mA01
A:40-244
1b
1k6mB01
B:40-244
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Human (Homo sapiens)
(18)
2a
1k6mA02
A:249-469
2b
1k6mB02
B:249-469
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_6PF2K_1k6mB01 (B:39-250)
1b: PFAM_6PF2K_1k6mB02 (B:39-250)
2a: PFAM_His_Phos_1_1k6mB03 (B:252-399)
2b: PFAM_His_Phos_1_1k6mB04 (B:252-399)
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Clan
:
P-loop_NTPase
(1112)
Family
:
6PF2K
(1)
Homo sapiens (Human)
(1)
1a
6PF2K-1k6mB01
B:39-250
1b
6PF2K-1k6mB02
B:39-250
Clan
:
PGM
(50)
Family
:
His_Phos_1
(31)
Homo sapiens (Human)
(6)
2a
His_Phos_1-1k6mB03
B:252-399
2b
His_Phos_1-1k6mB04
B:252-399
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