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1K54
Biol. Unit 1
Info
Asym.Unit (338 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (172 KB)
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(1)
Title
:
OXA-10 CLASS D BETA-LACTAMASE PARTIALLY ACYLATED WITH REACTED 6BETA-(1-HYDROXY-1-METHYLETHYL) PENICILLANIC ACID
Authors
:
D. Golemi, L. Maveyraud, S. Vakulenko, J. P. Samama, S. Mobashery
Date
:
10 Oct 01 (Deposition) - 07 Nov 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Beta-Lactamase, Antibiotic Resistance, Carbamylation, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Golemi, L. Maveyraud, S. Vakulenko, J. P. Samama, S. Mobashery
Critical Involvement Of A Carbamylated Lysine In Catalytic Function Of Class D Beta-Lactamases.
Proc. Natl. Acad. Sci. Usa V. 98 14280 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: (1R)-2-(1-CARBOXY-2-HYDROXY-2-METH... (HOQa)
2b: (1R)-2-(1-CARBOXY-2-HYDROXY-2-METH... (HOQb)
3a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
3b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
HOQ
1
Ligand/Ion
(1R)-2-(1-CARBOXY-2-HYDROXY-2-METHYL-PROPYL)-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID
3
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
4
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:95 , SER C:67 , THR C:206 , GLY C:207 , PHE C:208 , ARG C:250 , SO4 C:902 , HOH C:926
BINDING SITE FOR RESIDUE SO4 C 901
02
AC2
SOFTWARE
SER C:67 , LYS C:70 , SER C:115 , ALA C:116 , VAL C:117 , SO4 C:901 , HOH C:926
BINDING SITE FOR RESIDUE SO4 C 902
03
AC3
SOFTWARE
THR A:206 , ARG A:250 , LYS A:251 , SO4 A:905 , HOH A:1018
BINDING SITE FOR RESIDUE SO4 A 903
04
AC4
SOFTWARE
LYS C:61 , HOH C:936
BINDING SITE FOR RESIDUE SO4 C 904
05
AC5
SOFTWARE
SER A:67 , SER A:115 , LYS A:205 , THR A:206 , GLY A:207 , PHE A:208 , ARG A:250 , SO4 A:903 , HOQ A:967
BINDING SITE FOR RESIDUE SO4 A 905
06
AC6
SOFTWARE
MET A:99 , LYS A:100 , GLN A:101
BINDING SITE FOR RESIDUE SO4 A 906
07
AC7
SOFTWARE
LYS B:152 , THR C:213 , ASN C:216 , HOH C:965
BINDING SITE FOR RESIDUE SO4 C 907
08
BC5
SOFTWARE
ARG A:131 , LYS A:134 , TYR A:135
BINDING SITE FOR RESIDUE SO4 A 914
09
BC8
SOFTWARE
LYS A:95 , THR D:206 , GLY D:207 , PHE D:208 , ARG D:250 , HOH D:1152
BINDING SITE FOR RESIDUE SO4 D 917
10
BC9
SOFTWARE
ALA A:66 , SER A:67 , KCX A:70 , MET A:99 , TRP A:102 , VAL A:117 , LEU A:155 , GLY A:207 , PHE A:208 , SO4 A:905 , HOH A:1131 , HOH A:1140
BINDING SITE FOR RESIDUE HOQ A 967
11
CC2
SOFTWARE
THR A:107 , ARG A:109 , HOH A:1004 , HOH A:1052 , HOH A:1110 , GLU C:199 , GLU C:227 , GLU C:229
BINDING SITE FOR RESIDUE EDO A 1001
12
CC3
SOFTWARE
GLU A:199 , GLU A:227 , GLU A:229 , HOH A:1057 , HOH A:1113 , THR C:107 , ARG C:109
BINDING SITE FOR RESIDUE EDO A 1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_D (A:65-75,C:65-75)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_D
PS00337
Beta-lactamase class-D active site.
BLO10_PSEAI
65-75
2
A:65-75
-
C:65-75
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1k54a_ (A:)
1b: SCOP_d1k54b_ (B:)
1c: SCOP_d1k54c_ (C:)
1d: SCOP_d1k54d_ (D:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Class D beta-lactamase
(32)
Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
(25)
1a
d1k54a_
A:
1b
d1k54b_
B:
1c
d1k54c_
C:
1d
d1k54d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1k54D00 (D:21-266)
1b: CATH_1k54B00 (B:21-265)
1c: CATH_1k54A00 (A:22-265)
1d: CATH_1k54C00 (C:22-265)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Pseudomonas aeruginosa. Organism_taxid: 287.
(17)
1a
1k54D00
D:21-266
1b
1k54B00
B:21-265
1c
1k54A00
A:22-265
1d
1k54C00
C:22-265
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (338 KB)
Header - Asym.Unit
Biol.Unit 1 (164 KB)
Header - Biol.Unit 1
Biol.Unit 2 (172 KB)
Header - Biol.Unit 2
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