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1K54
Asym. Unit
Info
Asym.Unit (338 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (172 KB)
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(1)
Title
:
OXA-10 CLASS D BETA-LACTAMASE PARTIALLY ACYLATED WITH REACTED 6BETA-(1-HYDROXY-1-METHYLETHYL) PENICILLANIC ACID
Authors
:
D. Golemi, L. Maveyraud, S. Vakulenko, J. P. Samama, S. Mobashery
Date
:
10 Oct 01 (Deposition) - 07 Nov 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Beta-Lactamase, Antibiotic Resistance, Carbamylation, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Golemi, L. Maveyraud, S. Vakulenko, J. P. Samama, S. Mobashery
Critical Involvement Of A Carbamylated Lysine In Catalytic Function Of Class D Beta-Lactamases.
Proc. Natl. Acad. Sci. Usa V. 98 14280 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 27)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: (1R)-2-(1-CARBOXY-2-HYDROXY-2-METH... (HOQa)
2b: (1R)-2-(1-CARBOXY-2-HYDROXY-2-METH... (HOQb)
3a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
3b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
HOQ
2
Ligand/Ion
(1R)-2-(1-CARBOXY-2-HYDROXY-2-METHYL-PROPYL)-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID
3
KCX
2
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
4
SO4
17
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:95 , SER C:67 , THR C:206 , GLY C:207 , PHE C:208 , ARG C:250 , SO4 C:902 , HOH C:926
BINDING SITE FOR RESIDUE SO4 C 901
02
AC2
SOFTWARE
SER C:67 , LYS C:70 , SER C:115 , ALA C:116 , VAL C:117 , SO4 C:901 , HOH C:926
BINDING SITE FOR RESIDUE SO4 C 902
03
AC3
SOFTWARE
THR A:206 , ARG A:250 , LYS A:251 , SO4 A:905 , HOH A:1018
BINDING SITE FOR RESIDUE SO4 A 903
04
AC4
SOFTWARE
LYS C:61 , HOH C:936
BINDING SITE FOR RESIDUE SO4 C 904
05
AC5
SOFTWARE
SER A:67 , SER A:115 , LYS A:205 , THR A:206 , GLY A:207 , PHE A:208 , ARG A:250 , SO4 A:903 , HOQ A:967
BINDING SITE FOR RESIDUE SO4 A 905
06
AC6
SOFTWARE
MET A:99 , LYS A:100 , GLN A:101
BINDING SITE FOR RESIDUE SO4 A 906
07
AC7
SOFTWARE
LYS B:152 , THR C:213 , ASN C:216 , HOH C:965
BINDING SITE FOR RESIDUE SO4 C 907
08
AC8
SOFTWARE
SER B:67 , SER B:115 , LYS B:205 , THR B:206 , GLY B:207 , PHE B:208 , ARG B:250 , SO4 B:909 , HOQ B:967 , HOH B:1082
BINDING SITE FOR RESIDUE SO4 B 908
09
AC9
SOFTWARE
THR B:206 , ARG B:250 , LYS B:251 , SO4 B:908 , HOH B:1082 , HOH B:1233
BINDING SITE FOR RESIDUE SO4 B 909
10
BC1
SOFTWARE
ARG D:250 , LYS D:251 , HOH D:1091 , HOH D:1125 , HOH D:1242
BINDING SITE FOR RESIDUE SO4 D 910
11
BC2
SOFTWARE
SER D:67 , LYS D:70 , SER D:115 , ALA D:116 , VAL D:117 , HOH D:1118 , HOH D:1197
BINDING SITE FOR RESIDUE SO4 D 911
12
BC3
SOFTWARE
MET B:99 , LYS B:100 , GLN B:101 , HOH B:1232
BINDING SITE FOR RESIDUE SO4 B 912
13
BC4
SOFTWARE
THR B:80 , ARG B:131 , LYS B:134 , TYR B:135 , HOH B:1118
BINDING SITE FOR RESIDUE SO4 B 913
14
BC5
SOFTWARE
ARG A:131 , LYS A:134 , TYR A:135
BINDING SITE FOR RESIDUE SO4 A 914
15
BC6
SOFTWARE
ARG B:160
BINDING SITE FOR RESIDUE SO4 B 915
16
BC7
SOFTWARE
HOH B:1192 , SER D:181 , LYS D:182 , HOH D:1065
BINDING SITE FOR RESIDUE SO4 D 916
17
BC8
SOFTWARE
LYS A:95 , THR D:206 , GLY D:207 , PHE D:208 , ARG D:250 , HOH D:1152
BINDING SITE FOR RESIDUE SO4 D 917
18
BC9
SOFTWARE
ALA A:66 , SER A:67 , KCX A:70 , MET A:99 , TRP A:102 , VAL A:117 , LEU A:155 , GLY A:207 , PHE A:208 , SO4 A:905 , HOH A:1131 , HOH A:1140
BINDING SITE FOR RESIDUE HOQ A 967
19
CC1
SOFTWARE
ALA B:66 , SER B:67 , KCX B:70 , MET B:99 , TRP B:102 , VAL B:117 , GLY B:207 , PHE B:208 , SO4 B:908 , HOH B:1120
BINDING SITE FOR RESIDUE HOQ B 967
20
CC2
SOFTWARE
THR A:107 , ARG A:109 , HOH A:1004 , HOH A:1052 , HOH A:1110 , GLU C:199 , GLU C:227 , GLU C:229
BINDING SITE FOR RESIDUE EDO A 1001
21
CC3
SOFTWARE
GLU A:199 , GLU A:227 , GLU A:229 , HOH A:1057 , HOH A:1113 , THR C:107 , ARG C:109
BINDING SITE FOR RESIDUE EDO A 1002
22
CC4
SOFTWARE
GLU B:199 , GLU B:229 , HOH B:1020 , HOH B:1078 , THR D:107
BINDING SITE FOR RESIDUE EDO B 1003
23
CC5
SOFTWARE
ASN B:38 , ASP B:240 , ASP B:242 , HOH B:1015 , HOH B:1022 , HOH B:1129
BINDING SITE FOR RESIDUE EDO B 1004
24
CC6
SOFTWARE
THR B:107 , GLU D:199 , GLU D:229 , HOH D:1009
BINDING SITE FOR RESIDUE EDO D 1005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_D (A:65-75,B:65-75,C:65-75,D:65-75)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_D
PS00337
Beta-lactamase class-D active site.
BLO10_PSEAI
65-75
4
A:65-75
B:65-75
C:65-75
D:65-75
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1k54a_ (A:)
1b: SCOP_d1k54b_ (B:)
1c: SCOP_d1k54c_ (C:)
1d: SCOP_d1k54d_ (D:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Class D beta-lactamase
(32)
Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
(25)
1a
d1k54a_
A:
1b
d1k54b_
B:
1c
d1k54c_
C:
1d
d1k54d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1k54D00 (D:21-266)
1b: CATH_1k54B00 (B:21-265)
1c: CATH_1k54A00 (A:22-265)
1d: CATH_1k54C00 (C:22-265)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Pseudomonas aeruginosa. Organism_taxid: 287.
(17)
1a
1k54D00
D:21-266
1b
1k54B00
B:21-265
1c
1k54A00
A:22-265
1d
1k54C00
C:22-265
[
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Pfam Domains
(0, 0)
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all PFAM domains
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