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1K3Z
Asym. Unit
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Asym.Unit (82 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE IKBB/NF-KB P65 HOMODIMER COMPLEX
Authors
:
M. Shiva, D. B. Huang, Y. Chen, T. Huxford, S. Ghosh, G. Ghosh
Date
:
04 Oct 01 (Deposition) - 04 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A,B,D (1x)
Keywords
:
Protein-Protein Complex, Transcription Factors, Nuclear Localization
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Malek, D. B. Huang, T. Huxford, S. Ghosh, G. Ghosh
X-Ray Crystal Structure Of An Ikappabbeta X Nf-Kappab P65 Homodimer Complex.
J. Biol. Chem. V. 278 23094 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: ANK_REP_REGION (D:57-298)
2: ANK_REPEAT (D:57-89|D:93-125|D:206-238|D:240-2...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
IKBB_MOUSE
57-298
1
D:57-298
2
ANK_REPEAT
PS50088
Ankyrin repeat profile.
IKBB_MOUSE
57-89
93-125
206-238
240-272
4
D:57-89
D:93-125
D:206-238
D:240-272
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1k3za_ (A:)
1b: SCOP_d1k3zb_ (B:)
2a: SCOP_d1k3zd_ (D:)
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Protein Domains
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)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
p65 subunit of NF-kappa B (NFKB), dimerization domain
(15)
Mouse (Mus musculus) [TaxId: 10090]
(13)
1a
d1k3za_
A:
1b
d1k3zb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
Transcription factor inhibitor I-kappa-B-beta, IKBB
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
2a
d1k3zd_
D:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1k3zD00 (D:52-309)
2a: CATH_1k3zB00 (B:191-308)
2b: CATH_1k3zA00 (A:191-320)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
House mouse (Mus musculus)
(9)
1a
1k3zD00
D:52-309
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1k3zB00
B:191-308
2b
1k3zA00
A:191-320
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ank_1k3zD01 (D:240-272)
1b: PFAM_Ank_1k3zD02 (D:240-272)
1c: PFAM_Ank_1k3zD03 (D:240-272)
1d: PFAM_Ank_1k3zD04 (D:240-272)
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Clan
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Ank
(35)
Family
:
Ank
(23)
Mus musculus (Mouse)
(2)
1a
Ank-1k3zD01
D:240-272
1b
Ank-1k3zD02
D:240-272
1c
Ank-1k3zD03
D:240-272
1d
Ank-1k3zD04
D:240-272
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Asymmetric Unit 1
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Asym.Unit (82 KB)
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