PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1K32
Asym. Unit
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (1022 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE TRICORN PROTEASE
Authors
:
H. Brandstetter, J. -S. Kim, M. Groll, R. Huber
Date
:
01 Oct 01 (Deposition) - 05 Dec 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Protein Degradation, Substrate Gating, Serine Protease, Beta Propeller, Proteasome, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Brandstetter, J. S. Kim, M. Groll, R. Huber
Crystal Structure Of The Tricorn Protease Reveals A Protein Disassembly Line.
Nature V. 414 466 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 24)
Info
All SCOP Domains
1a: SCOP_d1k32a2 (A:39-319)
1b: SCOP_d1k32b2 (B:39-319)
1c: SCOP_d1k32c2 (C:39-319)
1d: SCOP_d1k32d2 (D:39-319)
1e: SCOP_d1k32e2 (E:39-319)
1f: SCOP_d1k32f2 (F:39-319)
2a: SCOP_d1k32a3 (A:320-679)
2b: SCOP_d1k32b3 (B:320-679)
2c: SCOP_d1k32c3 (C:320-679)
2d: SCOP_d1k32d3 (D:320-679)
2e: SCOP_d1k32e3 (E:320-679)
2f: SCOP_d1k32f3 (F:320-679)
3a: SCOP_d1k32a1 (A:763-853)
3b: SCOP_d1k32b1 (B:763-853)
3c: SCOP_d1k32c1 (C:763-853)
3d: SCOP_d1k32d1 (D:763-853)
3e: SCOP_d1k32e1 (E:763-853)
3f: SCOP_d1k32f1 (F:763-853)
4a: SCOP_d1k32a4 (A:680-762,A:854-1061)
4b: SCOP_d1k32b4 (B:680-762,B:854-1061)
4c: SCOP_d1k32c4 (C:680-762,C:854-1061)
4d: SCOP_d1k32d4 (D:680-762,D:854-1061)
4e: SCOP_d1k32e4 (E:680-762,E:854-1061)
4f: SCOP_d1k32f4 (F:680-762,F:854-1061)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Tricorn protease N-terminal domain
(4)
Family
:
Tricorn protease N-terminal domain
(4)
Protein domain
:
Tricorn protease N-terminal domain
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
1a
d1k32a2
A:39-319
1b
d1k32b2
B:39-319
1c
d1k32c2
C:39-319
1d
d1k32d2
D:39-319
1e
d1k32e2
E:39-319
1f
d1k32f2
F:39-319
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Tricorn protease domain 2
(4)
Family
:
Tricorn protease domain 2
(4)
Protein domain
:
Tricorn protease domain 2
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
2a
d1k32a3
A:320-679
2b
d1k32b3
B:320-679
2c
d1k32c3
C:320-679
2d
d1k32d3
D:320-679
2e
d1k32e3
E:320-679
2f
d1k32f3
F:320-679
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
Tail specific protease PDZ domain
(8)
Protein domain
:
Tricorn protease
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
3a
d1k32a1
A:763-853
3b
d1k32b1
B:763-853
3c
d1k32c1
C:763-853
3d
d1k32d1
D:763-853
3e
d1k32e1
E:763-853
3f
d1k32f1
F:763-853
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Tail specific protease, catalytic domain
(9)
Protein domain
:
Tricorn protease
(4)
Thermoplasma acidophilum [TaxId: 2303]
(4)
4a
d1k32a4
A:680-762,A:854-1061
4b
d1k32b4
B:680-762,B:854-1061
4c
d1k32c4
C:680-762,C:854-1061
4d
d1k32d4
D:680-762,D:854-1061
4e
d1k32e4
E:680-762,E:854-1061
4f
d1k32f4
F:680-762,F:854-1061
[
close SCOP info
]
CATH Domains
(5, 30)
Info
all CATH domains
1a: CATH_1k32A03 (A:681-752)
1b: CATH_1k32B03 (B:681-752)
1c: CATH_1k32C03 (C:681-752)
1d: CATH_1k32D03 (D:681-752)
1e: CATH_1k32E03 (E:681-752)
1f: CATH_1k32F03 (F:681-752)
2a: CATH_1k32A05 (A:856-1061)
2b: CATH_1k32B05 (B:856-1061)
2c: CATH_1k32C05 (C:856-1061)
2d: CATH_1k32D05 (D:856-1061)
2e: CATH_1k32E05 (E:856-1061)
2f: CATH_1k32F05 (F:856-1061)
3a: CATH_1k32A01 (A:39-310)
3b: CATH_1k32B01 (B:39-310)
3c: CATH_1k32C01 (C:39-310)
3d: CATH_1k32D01 (D:39-310)
3e: CATH_1k32E01 (E:39-310)
3f: CATH_1k32F01 (F:39-310)
4a: CATH_1k32A02 (A:326-675)
4b: CATH_1k32B02 (B:326-675)
4c: CATH_1k32C02 (C:326-675)
4d: CATH_1k32D02 (D:326-675)
4e: CATH_1k32E02 (E:326-675)
4f: CATH_1k32F02 (F:326-675)
5a: CATH_1k32A04 (A:761-855)
5b: CATH_1k32B04 (B:761-855)
5c: CATH_1k32C04 (C:761-855)
5d: CATH_1k32D04 (D:761-855)
5e: CATH_1k32E04 (E:761-855)
5f: CATH_1k32F04 (F:761-855)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Transcription Regulator spoIIAA
(28)
Homologous Superfamily
:
[code=3.30.750.44, no name defined]
(4)
Thermoplasma acidophilum. Organism_taxid: 2303.
(1)
1a
1k32A03
A:681-752
1b
1k32B03
B:681-752
1c
1k32C03
C:681-752
1d
1k32D03
D:681-752
1e
1k32E03
E:681-752
1f
1k32F03
F:681-752
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Thermoplasma acidophilum. Organism_taxid: 2303.
(1)
2a
1k32A05
A:856-1061
2b
1k32B05
B:856-1061
2c
1k32C05
C:856-1061
2d
1k32D05
D:856-1061
2e
1k32E05
E:856-1061
2f
1k32F05
F:856-1061
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
Tricorn protease N-terminal domain
(4)
Thermoplasma acidophilum. Organism_taxid: 2303.
(1)
3a
1k32A01
A:39-310
3b
1k32B01
B:39-310
3c
1k32C01
C:39-310
3d
1k32D01
D:39-310
3e
1k32E01
E:39-310
3f
1k32F01
F:39-310
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Thermoplasma acidophilum. Organism_taxid: 2303.
(1)
4a
1k32A02
A:326-675
4b
1k32B02
B:326-675
4c
1k32C02
C:326-675
4d
1k32D02
D:326-675
4e
1k32E02
E:326-675
4f
1k32F02
F:326-675
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Thermoplasma acidophilum. Organism_taxid: 2303.
(1)
5a
1k32A04
A:761-855
5b
1k32B04
B:761-855
5c
1k32C04
C:761-855
5d
1k32D04
D:761-855
5e
1k32E04
E:761-855
5f
1k32F04
F:761-855
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_PD40_1k32F01 (F:492-523)
1b: PFAM_PD40_1k32F02 (F:492-523)
1c: PFAM_PD40_1k32F03 (F:492-523)
1d: PFAM_PD40_1k32F04 (F:492-523)
1e: PFAM_PD40_1k32F05 (F:492-523)
1f: PFAM_PD40_1k32F06 (F:492-523)
2a: PFAM_Peptidase_S41_1k32F07 (F:878-1033)
2b: PFAM_Peptidase_S41_1k32F08 (F:878-1033)
2c: PFAM_Peptidase_S41_1k32F09 (F:878-1033)
2d: PFAM_Peptidase_S41_1k32F10 (F:878-1033)
2e: PFAM_Peptidase_S41_1k32F11 (F:878-1033)
2f: PFAM_Peptidase_S41_1k32F12 (F:878-1033)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
PD40
(5)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(4)
1a
PD40-1k32F01
F:492-523
1b
PD40-1k32F02
F:492-523
1c
PD40-1k32F03
F:492-523
1d
PD40-1k32F04
F:492-523
1e
PD40-1k32F05
F:492-523
1f
PD40-1k32F06
F:492-523
Clan
:
ClpP_crotonase
(88)
Family
:
Peptidase_S41
(5)
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
(4)
2a
Peptidase_S41-1k32F07
F:878-1033
2b
Peptidase_S41-1k32F08
F:878-1033
2c
Peptidase_S41-1k32F09
F:878-1033
2d
Peptidase_S41-1k32F10
F:878-1033
2e
Peptidase_S41-1k32F11
F:878-1033
2f
Peptidase_S41-1k32F12
F:878-1033
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.0 MB)
Header - Asym.Unit
Biol.Unit 1 (1022 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1K32
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help