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1K2O
Biol. Unit 1
Info
Asym.Unit (161 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
CYTOCHROME P450CAM WITH BOUND BIS(2,2'-BIPYRIDINE)-(5-METHYL-2-2'-BIPYRIDINE)-C2-ADAMANTANE RUTHENIUM (II)
Authors
:
A. R. Dunn, I. J. Dmochowski, A. M. Bilwes, H. B. Gray, B. R. Crane
Date
:
28 Sep 01 (Deposition) - 17 Oct 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
P450, Monooxygenase, Electron Transfer, Energy Transfer, Fluorinated Aromatics, Biphenyl, Adamantane, Ruthenium Channel, Substrate- Binding, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. R. Dunn, I. J. Dmochowski, A. M. Bilwes, H. B. Gray, B. R. Crane
Probing The Open State Of Cytochrome P450Cam With Ruthenium-Linker Substrates.
Proc. Natl. Acad. Sci. Usa V. 98 12420 2001
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
1c: CACODYLATE ION (CACc)
1d: CACODYLATE ION (CACd)
1e: CACODYLATE ION (CACe)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: DELTA-BIS(2,2'-BIPYRIDINE)-(5-METH... (RFAa)
3b: DELTA-BIS(2,2'-BIPYRIDINE)-(5-METH... (RFAb)
4a: LAMBDA-BIS(2,2'-BIPYRIDINE)-(5-MET... (RFBa)
4b: LAMBDA-BIS(2,2'-BIPYRIDINE)-(5-MET... (RFBb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CAC
2
Ligand/Ion
CACODYLATE ION
2
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
RFA
1
Ligand/Ion
DELTA-BIS(2,2'-BIPYRIDINE)-(5-METHYL-2-2'-BIPYRIDINE)-C2-ADAMANTANE RUTHENIUM (II)
4
RFB
1
Ligand/Ion
LAMBDA-BIS(2,2'-BIPYRIDINE)-(5-METHYL-2-2'-BIPYRIDINE)-C2-ADAMANTANE RUTHENIUM (II)
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Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
CYS A:85 , ARG A:90 , GLY A:93 , TYR A:96
BINDING SITE FOR RESIDUE CAC A 501
2
AC4
SOFTWARE
ASN A:10 , LEU A:11 , ASP A:27 , CYS A:58
BINDING SITE FOR RESIDUE CAC A 503
3
AC6
SOFTWARE
PRO A:100 , GLN A:108 , ARG A:112 , LEU A:244 , LEU A:245 , GLY A:248 , GLY A:249 , THR A:252 , ASP A:297 , ARG A:299 , GLN A:322 , THR A:349 , PHE A:350 , GLY A:351 , HIS A:355 , CYS A:357 , LEU A:358 , GLY A:359 , RFA A:900 , RFB A:901 , HOH A:1015 , HOH A:1063 , HOH A:1164 , HOH A:1366
BINDING SITE FOR RESIDUE HEM A 417
4
AC8
SOFTWARE
PHE A:87 , PRO A:89 , ALA A:92 , GLY A:93 , GLU A:94 , TYR A:96 , MET A:184 , THR A:185 , PRO A:187 , PHE A:193 , VAL A:247 , ASP A:297 , ILE A:395 , VAL A:396 , HEM A:417
BINDING SITE FOR RESIDUE RFA A 900
5
AC9
SOFTWARE
TYR A:29 , PHE A:87 , ALA A:92 , GLY A:93 , GLU A:94 , TYR A:96 , MET A:184 , THR A:185 , PHE A:193 , LEU A:244 , VAL A:247 , ILE A:395 , VAL A:396 , HEM A:417
BINDING SITE FOR RESIDUE RFB A 901
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:350-359)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CPXA_PSEPU
351-360
1
A:350-359
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1k2oa_ (A:)
1b: SCOP_d1k2ob_ (B:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Cytochrome P450-CAM
(108)
Pseudomonas putida [TaxId: 303]
(108)
1a
d1k2oa_
A:
1b
d1k2ob_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1k2oA00 (A:9-414)
1b: CATH_1k2oB00 (B:9-414)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Pseudomonas putida. Organism_taxid: 303.
(26)
1a
1k2oA00
A:9-414
1b
1k2oB00
B:9-414
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_p450_1k2oB01 (B:174-393)
1b: PFAM_p450_1k2oB02 (B:174-393)
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Clan
:
no clan defined [family: p450]
(161)
Family
:
p450
(161)
Pseudomonas putida (Arthrobacter siderocapsulatus)
(49)
1a
p450-1k2oB01
B:174-393
1b
p450-1k2oB02
B:174-393
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Chain A
Asymmetric Unit 1
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Asym.Unit (161 KB)
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