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1K28
Asym. Unit
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Asym.Unit (164 KB)
Biol.Unit 1 (460 KB)
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(1)
Title
:
THE STRUCTURE OF THE BACTERIOPHAGE T4 CELL-PUNCTURING DEVICE
Authors
:
S. Kanamaru, P. G. Leiman, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesya F. Arisaka, M. G. Rossmann
Date
:
26 Sep 01 (Deposition) - 06 Feb 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A,D (3x)
Keywords
:
Triple-Stranded Beta-Helix, Ob Fold, Pseudohexamer, T4 Tail Lysozyme, Hub, Gp27-Gp5*-Gp5C, Hydrolase-Structural Protein Complex
(Keyword Search:
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Reference
:
S. Kanamaru, P. G. Leiman, V. A. Kostyuchenko, P. R. Chipman, V. V. Mesyanzhinov, F. Arisaka, M. G. Rossmann
Structure Of The Cell-Puncturing Device Of Bacteriophage T4
Nature V. 415 553 2002
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
3a: PHOSPHATE ION (PO4a)
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No.
Name
Count
Type
Full Name
1
K
1
Ligand/Ion
POTASSIUM ION
2
MSE
15
Mod. Amino Acid
SELENOMETHIONINE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:799 , HOH A:885
BINDING SITE FOR RESIDUE K A 585
2
AC2
SOFTWARE
LYS A:454 , HOH A:634
BINDING SITE FOR RESIDUE PO4 A 586
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 5)
Info
All SCOP Domains
1a: SCOP_d1k28a1 (A:6-129)
2a: SCOP_d1k28d1 (D:4-200)
2b: SCOP_d1k28d2 (D:201-376)
3a: SCOP_d1k28a2 (A:362-584)
4a: SCOP_d1k28a3 (A:130-345)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
gp5 N-terminal domain-like
(2)
Family
:
gp4 N-terminal domain-like
(2)
Protein domain
:
Tail-associated lysozyme gp5, N-terminal domain
(1)
Bacteriophage T4 [TaxId: 10665]
(1)
1a
d1k28a1
A:6-129
Fold
:
Phage tail proteins
(11)
Superfamily
:
Phage tail proteins
(11)
Family
:
Baseplate protein-like
(7)
Protein domain
:
Baseplate structural protein gp27
(3)
Bacteriophage T4 [TaxId: 10665]
(3)
2a
d1k28d1
D:4-200
2b
d1k28d2
D:201-376
Fold
:
Triple-stranded beta-helix
(23)
Superfamily
:
Phage fibre proteins
(23)
Family
:
Tail-associated lysozyme gp5, C-terminal domain
(1)
Protein domain
:
Tail-associated lysozyme gp5, C-terminal domain
(1)
Bacteriophage T4 [TaxId: 10665]
(1)
3a
d1k28a2
A:362-584
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
Phage lysozyme
(550)
Protein domain
:
Tail-associated lysozyme gp5, catalytic domain
(1)
Bacteriophage T4 [TaxId: 10665]
(1)
4a
d1k28a3
A:130-345
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1k28A03 (A:174-342)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.40, no name defined]
(526)
Enterobacteria phage t4. Organism_taxid: 10665.
(237)
1a
1k28A03
A:174-342
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (164 KB)
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