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1K0B
Biol. Unit 1
Info
Asym.Unit (169 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
URE2P IN COMPLEX WITH GLUTATHIONE
Authors
:
L. Bousset, H. Belrhali, R. Melki, S. Morera
Date
:
19 Sep 01 (Deposition) - 21 Dec 01 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nitrate Assimilation, Structural Genomics, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Bousset, H. Belrhali, R. Melki, S. Morera
Crystal Structures Of The Yeast Prion Ure2P Functional Region In Complex With Glutathione And Related Compounds.
Biochemistry V. 40 13564 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GSH
1
Ligand/Ion
GLUTATHIONE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:124 , PHE A:146 , HIS A:151 , ARG A:164 , VAL A:165 , PRO A:166 , GLU A:180 , SER A:181 , HOH A:361 , HOH A:365 , HOH A:385
BINDING SITE FOR RESIDUE GSH A 355
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:112-196,B:112-196)
2: GST_CTER (A:205-351,B:205-353)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
URE2_YEAST
112-196
2
A:112-196
B:112-196
-
-
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
URE2_YEAST
205-354
2
A:205-351
B:205-353
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1k0ba1 (A:201-351)
1b: SCOP_d1k0bb1 (B:201-353)
1c: SCOP_d1k0bc1 (C:201-354)
1d: SCOP_d1k0bd1 (D:201-354)
2a: SCOP_d1k0ba2 (A:108-200)
2b: SCOP_d1k0bb2 (B:97-200)
2c: SCOP_d1k0bc2 (C:100-200)
2d: SCOP_d1k0bd2 (D:96-200)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Yeast prion protein ure2p, nitrogen regulation fragment
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
1a
d1k0ba1
A:201-351
1b
d1k0bb1
B:201-353
1c
d1k0bc1
C:201-354
1d
d1k0bd1
D:201-354
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Yeast prion protein ure2p, nitrogen regulation fragment
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
2a
d1k0ba2
A:108-200
2b
d1k0bb2
B:97-200
2c
d1k0bc2
C:100-200
2d
d1k0bd2
D:96-200
[
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]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1k0bB01 (B:100-196)
1b: CATH_1k0bC01 (C:100-196)
1c: CATH_1k0bD01 (D:100-196)
1d: CATH_1k0bA01 (A:108-196)
2a: CATH_1k0bA02 (A:197-350)
2b: CATH_1k0bB02 (B:197-352)
2c: CATH_1k0bC02 (C:197-352)
2d: CATH_1k0bD02 (D:197-352)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Baker's yeast (Saccharomyces cerevisiae)
(19)
1a
1k0bB01
B:100-196
1b
1k0bC01
C:100-196
1c
1k0bD01
D:100-196
1d
1k0bA01
A:108-196
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Baker's yeast (Saccharomyces cerevisiae)
(9)
2a
1k0bA02
A:197-350
2b
1k0bB02
B:197-352
2c
1k0bC02
C:197-352
2d
1k0bD02
D:197-352
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GST_C_1k0bD01 (D:223-345)
1b: PFAM_GST_C_1k0bD02 (D:223-345)
1c: PFAM_GST_C_1k0bD03 (D:223-345)
1d: PFAM_GST_C_1k0bD04 (D:223-345)
2a: PFAM_GST_N_1k0bD05 (D:112-190)
2b: PFAM_GST_N_1k0bD06 (D:112-190)
2c: PFAM_GST_N_1k0bD07 (D:112-190)
2d: PFAM_GST_N_1k0bD08 (D:112-190)
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Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
1a
GST_C-1k0bD01
D:223-345
1b
GST_C-1k0bD02
D:223-345
1c
GST_C-1k0bD03
D:223-345
1d
GST_C-1k0bD04
D:223-345
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
2a
GST_N-1k0bD05
D:112-190
2b
GST_N-1k0bD06
D:112-190
2c
GST_N-1k0bD07
D:112-190
2d
GST_N-1k0bD08
D:112-190
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Show PDB file:
Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (80 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
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