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1JYR
Asym. Unit
Info
Asym.Unit (26 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (41 KB)
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(1)
Title
:
XRAY STRUCTURE OF GRB2 SH2 DOMAIN COMPLEXED WITH A PHOSPHORYLATED PEPTIDE
Authors
:
P. Nioche, W. -Q. Liu, I. Broutin, F. Charbonnier, M. -T. Latreille, M. V B. Roques, C. Garbay, A. Ducruix
Date
:
13 Sep 01 (Deposition) - 13 Mar 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,L
Biol. Unit 1: A,L (1x)
Biol. Unit 2: A,L (2x)
Keywords
:
Receptor Binding, Regulatory, Inhibitor, Signaling Protein-Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
P. Nioche, W. Q. Liu, I. Broutin, F. Charbonnier, M. T. Latreille, M. Vidal, B. Roques, C. Garbay, A. Ducruix
Crystal Structures Of The Sh2 Domain Of Grb2: Highlight On The Binding Of A New High-Affinity Inhibitor.
J. Mol. Biol. V. 315 1167 2002
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
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Label:
No.
Name
Count
Type
Full Name
1
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:67 , SER A:75 , ARG A:86 , SER A:88 , SER A:90 , SER A:96 , LYS A:100 , ASN A:103 , HIS A:107 , PHE A:108 , LYS A:109 , LEU A:111 , LEU A:120 , TRP A:121 , TYR A:134 , SER A:137 , THR A:138 , ARG A:149 , HOH A:2036 , HOH A:2071 , HOH A:2081 , HOH A:2089 , HOH L:2017 , HOH L:2044 , HOH L:2046 , HOH L:2077
BINDING SITE FOR CHAIN L OF PEPTIDE: PSPYVNVQN
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:60-151)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
GRB2_HUMAN
60-152
1
A:60-151
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Exons
(3, 3)
Info
All Exons
Exon 1.4 (A:57-59)
Exon 1.6 (A:59-100)
Exon 1.7 (A:100-151)
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All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000392564
3a
ENSE00001512384
chr17:
73389945-73389632
314
GRB2_HUMAN
1-26
26
0
-
-
1.4
ENST00000392564
4
ENSE00000387085
chr17:
73328878-73328781
98
GRB2_HUMAN
27-59
33
1
A:57-59
3
1.6
ENST00000392564
6
ENSE00000855724
chr17:
73322101-73321979
123
GRB2_HUMAN
59-100
42
1
A:59-100
42
1.7
ENST00000392564
7
ENSE00000744359
chr17:
73317908-73317740
169
GRB2_HUMAN
100-156
57
1
A:100-151
52
1.8b
ENST00000392564
8b
ENSE00001512383
chr17:
73316634-73314157
2478
GRB2_HUMAN
157-217
61
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jyra_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Growth factor receptor-bound protein 2 (GRB2)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d1jyra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1jyrA00 (A:56-151)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1jyrA00
A:56-151
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH2_1jyrA01 (A:60-135)
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Clans
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)
(
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Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Homo sapiens (Human)
(79)
1a
SH2-1jyrA01
A:60-135
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Asymmetric Unit 1
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