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1JY3
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CENTRAL REGION OF BOVINE FIBRINOGEN (E5 FRAGMENT) AT 1.4 ANGSTROMS RESOLUTION
Authors
:
J. Madrazo, J. H. Brown, S. Litvinovich, R. Dominguez, S. Yakovlev, L. Medved, C. Cohen
Date
:
10 Sep 01 (Deposition) - 17 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : N,O,P,Q,R,S
Biol. Unit 1: N,O,P,Q,R,S (1x)
Keywords
:
Fibrinogen, Fragment E, Disulfide Bonds, Asymmetry, Coiled- Coil, Beta-Sheet, Crystal Structure, Blood Clotting
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Reference
:
J. Madrazo, J. H. Brown, S. Litvinovich, R. Dominguez, S. Yakovlev, L. Medved, C. Cohen
Crystal Structure Of The Central Region Of Bovine Fibrinogen (E5 Fragment) At 1. 4-A Resolution.
Proc. Natl. Acad. Sci. Usa V. 98 11967 2001
(for further references see the
PDB file header
)
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Hetero Components
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Sites
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1jy3n_ (N:)
1b: SCOP_d1jy3q_ (Q:)
2a: SCOP_d1jy3o_ (O:)
2b: SCOP_d1jy3r_ (R:)
3a: SCOP_d1jy3p_ (P:)
3b: SCOP_d1jy3s_ (S:)
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Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Fibrinogen coiled-coil and central regions
(71)
Family
:
Fibrinogen coiled-coil and central regions
(70)
Protein domain
:
Fibrinogen alpha chain
(27)
Cow (Bos taurus) [TaxId: 9913]
(2)
1a
d1jy3n_
N:
1b
d1jy3q_
Q:
Protein domain
:
Fibrinogen beta chain
(20)
Cow (Bos taurus) [TaxId: 9913]
(2)
2a
d1jy3o_
O:
2b
d1jy3r_
R:
Protein domain
:
Fibrinogen gamma chain
(23)
Cow (Bos taurus) [TaxId: 9913]
(2)
3a
d1jy3p_
P:
3b
d1jy3s_
S:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1jy3O00 (O:64-114)
1b: CATH_1jy3N00 (N:35-78)
1c: CATH_1jy3Q00 (Q:35-78)
1d: CATH_1jy3R00 (R:64-114)
1e: CATH_1jy3S00 (S:2-48)
1f: CATH_1jy3P00 (P:2-47)
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Class
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Mainly Alpha
(13335)
Architecture
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Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.50, no name defined]
(33)
Cattle (Bos taurus)
(2)
1a
1jy3O00
O:64-114
1b
1jy3N00
N:35-78
1c
1jy3Q00
Q:35-78
1d
1jy3R00
R:64-114
1e
1jy3S00
S:2-48
1f
1jy3P00
P:2-47
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Fib_alpha_1jy3Q01 (Q:35-78)
1b: PFAM_Fib_alpha_1jy3Q02 (Q:35-78)
1c: PFAM_Fib_alpha_1jy3R01 (R:67-114)
1d: PFAM_Fib_alpha_1jy3R02 (R:67-114)
1e: PFAM_Fib_alpha_1jy3S01 (S:3-48)
1f: PFAM_Fib_alpha_1jy3S02 (S:3-48)
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Clan
:
no clan defined [family: Fib_alpha]
(17)
Family
:
Fib_alpha
(17)
Bos taurus (Bovine)
(2)
1a
Fib_alpha-1jy3Q01
Q:35-78
1b
Fib_alpha-1jy3Q02
Q:35-78
1c
Fib_alpha-1jy3R01
R:67-114
1d
Fib_alpha-1jy3R02
R:67-114
1e
Fib_alpha-1jy3S01
S:3-48
1f
Fib_alpha-1jy3S02
S:3-48
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Asym.Unit (57 KB)
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