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1JXN
Asym. Unit
Info
Asym.Unit (164 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE LECTIN I FROM ULEX EUROPAEUS IN COMPLEX WITH THE METHYL GLYCOSIDE OF ALPHA-L-FUCOSE
Authors
:
G. F. Audette, D. J. H. Olson, A. R. S. Ross, J. W. Quail, L. T. J. Delbaere
Date
:
07 Sep 01 (Deposition) - 06 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Legume Lectin, Fucose-Specific Lectin, Ue-I, Uea-I, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. F. Audette, D. J. H. Olson, A. R. S. Ross, J. W. Quail, L. T. J. Delbaere
Examination Of The Structural Basis For O(H) Blood Group Specificity By Ulex Europaeus Lectin I
Can. J. Chem. V. 80 1010 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-L-METHYL-FUCOSE (MFUa)
2b: ALPHA-L-METHYL-FUCOSE (MFUb)
2c: ALPHA-L-METHYL-FUCOSE (MFUc)
2d: ALPHA-L-METHYL-FUCOSE (MFUd)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
MFU
4
Ligand/Ion
ALPHA-L-METHYL-FUCOSE
3
MN
4
Ligand/Ion
MANGANESE (II) ION
4
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:44 , THR A:86 , ASP A:87 , ARG A:102 , ALA A:103 , GLY A:104 , GLY A:105 , ASN A:134
BINDING SITE FOR RESIDUE MFU A 501
02
AC2
SOFTWARE
GLU B:44 , THR B:86 , ASP B:87 , GLY B:104 , GLY B:105 , VAL B:133 , ASN B:134 , TYR B:219
BINDING SITE FOR RESIDUE MFU B 602
03
AC3
SOFTWARE
GLU C:44 , THR C:86 , ASP C:87 , ARG C:102 , GLY C:104 , GLY C:105 , TYR C:106 , VAL C:133 , ASN C:134 , TYR C:219
BINDING SITE FOR RESIDUE MFU C 703
04
AC4
SOFTWARE
GLU D:44 , THR D:86 , ASP D:87 , GLY D:105 , VAL D:133 , ASN D:134 , TYR D:219
BINDING SITE FOR RESIDUE MFU D 804
05
AC5
SOFTWARE
GLU A:125 , ASP A:127 , ASP A:137 , HIS A:142 , HOH A:515 , HOH A:516
BINDING SITE FOR RESIDUE MN A 245
06
AC6
SOFTWARE
GLU B:125 , ASP B:127 , ASP B:137 , HIS B:142 , HOH B:620 , HOH B:642
BINDING SITE FOR RESIDUE MN B 245
07
AC7
SOFTWARE
GLU C:125 , ASP C:127 , ASP C:137 , HIS C:142 , HOH C:918 , HOH C:919
BINDING SITE FOR RESIDUE MN C 245
08
AC8
SOFTWARE
GLU D:125 , ASP D:127 , ASP D:137 , HIS D:142 , HOH D:822 , HOH D:823
BINDING SITE FOR RESIDUE MN D 245
09
AC9
SOFTWARE
ASP A:127 , ILE A:129 , ASN A:134 , ASP A:137 , HOH A:517 , HOH A:518
BINDING SITE FOR RESIDUE CA A 246
10
BC1
SOFTWARE
ASP B:127 , ILE B:129 , ASN B:134 , ASP B:137 , HOH B:618 , HOH B:641
BINDING SITE FOR RESIDUE CA B 246
11
BC2
SOFTWARE
ASP C:127 , ILE C:129 , ASN C:134 , ASP C:137 , HOH C:916 , HOH C:917
BINDING SITE FOR RESIDUE CA C 246
12
BC3
SOFTWARE
ASP D:127 , ILE D:129 , ASN D:134 , ASP D:137 , HOH D:820 , HOH D:821
BINDING SITE FOR RESIDUE CA D 246
13
BC4
SOFTWARE
CYS C:60 , ASN C:61
BINDING SITE FOR RESIDUE MRD C 901
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:122-128,B:122-128,C:122-128,D:12...)
2: LECTIN_LEGUME_ALPHA (A:206-215,B:206-215,C:206-215,D:20...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LEC1_ULEEU
123-129
4
A:122-128
B:122-128
C:122-128
D:122-128
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LEC1_ULEEU
207-216
4
A:206-215
B:206-215
C:206-215
D:206-215
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1jxna_ (A:)
1b: SCOP_d1jxnb_ (B:)
1c: SCOP_d1jxnc_ (C:)
1d: SCOP_d1jxnd_ (D:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Furze (Ulex europaeus), UEA-I [TaxId: 3902]
(2)
1a
d1jxna_
A:
1b
d1jxnb_
B:
1c
d1jxnc_
C:
1d
d1jxnd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1jxnD00 (D:1-239)
1b: CATH_1jxnA00 (A:1-240)
1c: CATH_1jxnB00 (B:1-240)
1d: CATH_1jxnC00 (C:1-240)
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Organisms
(
)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Furze (Ulex europaeus)
(7)
1a
1jxnD00
D:1-239
1b
1jxnA00
A:1-240
1c
1jxnB00
B:1-240
1d
1jxnC00
C:1-240
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1jxnD01 (D:2-234)
1b: PFAM_Lectin_legB_1jxnD02 (D:2-234)
1c: PFAM_Lectin_legB_1jxnD03 (D:2-234)
1d: PFAM_Lectin_legB_1jxnD04 (D:2-234)
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Ulex europaeus (Furze)
(4)
1a
Lectin_legB-1jxnD01
D:2-234
1b
Lectin_legB-1jxnD02
D:2-234
1c
Lectin_legB-1jxnD03
D:2-234
1d
Lectin_legB-1jxnD04
D:2-234
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