PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1JWJ
Biol. Unit 2
Info
Asym.Unit (156 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (149 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MURINE INDUCIBLE NITRIC OXIDE SYNTHASE OXYGENASE DIMER (DELTA 65) WITH W457F MUTATION AT TETRAHYDROBIOPTERIN BINDING SITE
Authors
:
M. Aoyagi, A. S. Arvai, S. Ghosh, D. J. Stuehr, J. A. Tainer, E. D. Getzoff
Date
:
04 Sep 01 (Deposition) - 31 Oct 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Nitric Oxide L-Arginine Monooxygenase, Heme, Dimer, Nos, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Aoyagi, A. S. Arvai, S. Ghosh, D. J. Stuehr, J. A. Tainer, E. D. Getzof
Structures Of Tetrahydrobiopterin Binding-Site Mutants Of Inducible Nitric Oxide Synthase Oxygenase Dimer And Implicated Roles Of Trp457.
Biochemistry V. 40 12826 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 22)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
4a: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Ba)
4b: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bb)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
12
Ligand/Ion
GLYCEROL
4
H4B
2
Ligand/Ion
5,6,7,8-TETRAHYDROBIOPTERIN
5
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
LEU A:134 , GLU A:168 , TYR B:145 , ALA B:151 , HIS B:156
BINDING SITE FOR RESIDUE BOG B 3100
02
AC5
SOFTWARE
TRP B:188 , CYS B:194 , SER B:236 , PHE B:363 , ASN B:364 , TRP B:366 , GLU B:371 , TYR B:485 , H4B B:902
BINDING SITE FOR RESIDUE HEM B 901
03
AC6
SOFTWARE
SER B:112 , MET B:114 , ARG B:375 , TRP B:455 , ILE B:456 , PHE B:457 , PHE B:470 , HIS B:471 , GLN B:472 , GLU B:473 , HEM B:901 , HOH B:1407 , HOH B:1585 , HOH B:1586
BINDING SITE FOR RESIDUE H4B B 902
04
AC7
SOFTWARE
ASP B:318 , VAL B:320
BINDING SITE FOR RESIDUE EDO B 3112
05
AC8
SOFTWARE
LEU B:110 , GLY B:111 , ASN B:476
BINDING SITE FOR RESIDUE EDO B 3111
06
BC3
SOFTWARE
GLY B:247 , LYS B:248 , GLN B:304 , THR B:492 , HIS B:493 , ILE B:494 , HOH B:1573 , HOH B:1575 , HOH B:1651
BINDING SITE FOR RESIDUE GOL B 3104
07
BC4
SOFTWARE
LEU B:94 , LYS B:97 , ARG B:448 , HOH B:1580
BINDING SITE FOR RESIDUE GOL B 3105
08
BC5
SOFTWARE
LEU B:177 , ARG B:209 , HOH B:1415 , HOH B:1605
BINDING SITE FOR RESIDUE GOL B 3106
09
BC6
SOFTWARE
GLU B:279 , LEU B:283 , ASP B:286 , HOH B:1438 , HOH B:1594
BINDING SITE FOR RESIDUE GOL B 3107
10
BC7
SOFTWARE
ALA B:401 , VAL B:414 , LEU B:417 , HIS B:418 , GLN B:421
BINDING SITE FOR RESIDUE GOL B 3108
11
BC8
SOFTWARE
ASN B:255 , SER B:256 , GLN B:257 , ARG B:260 , PHE B:280 , HOH B:1356
BINDING SITE FOR RESIDUE GOL B 3110
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_NOS2_MOUSE_001 (C211R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NOS2_MOUSE_001
*
C
211
R
NOS2_MOUSE
---
---
B
C
211
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NOS (B:193-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS2_MOUSE
193-200
2
-
B:193-200
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1jwja_ (A:)
1b: SCOP_d1jwjb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Superfamily
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Family
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Protein domain
:
Nitric oxide (NO) synthase oxygenase domain
(298)
Mouse (Mus musculus) [TaxId: 10090]
(43)
1a
d1jwja_
A:
1b
d1jwjb_
B:
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1jwjA03 (A:322-344,A:367-432)
1b: CATH_1jwjB03 (B:322-344,B:367-432)
2a: CATH_1jwjA01 (A:83-209,A:236-246,A:350-364,A:434-458)
2b: CATH_1jwjB01 (B:82-209,B:236-246,B:350-364,B:434-458)
3a: CATH_1jwjA02 (A:210-235,A:250-321,A:485-489)
3b: CATH_1jwjB02 (B:210-235,B:250-321,B:485-489)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 3
(105)
House mouse (Mus musculus)
(20)
1a
1jwjA03
A:322-344,A:367-432
1b
1jwjB03
B:322-344,B:367-432
Topology
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
House mouse (Mus musculus)
(20)
2a
1jwjA01
A:83-209,A:236-246,A:350-364,A:434-458
2b
1jwjB01
B:82-209,B:236-246,B:350-364,B:434-458
Topology
:
Nitric Oxide Synthase;Heme Domain; Chain A, domain 2
(105)
Homologous Superfamily
:
Nitric Oxide Synthase;Heme Domain;Chain A domain 2
(105)
House mouse (Mus musculus)
(20)
3a
1jwjA02
A:210-235,A:250-321,A:485-489
3b
1jwjB02
B:210-235,B:250-321,B:485-489
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NO_synthase_1jwjB01 (B:125-496)
1b: PFAM_NO_synthase_1jwjB02 (B:125-496)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: NO_synthase]
(140)
Family
:
NO_synthase
(140)
Mus musculus (Mouse)
(23)
1a
NO_synthase-1jwjB01
B:125-496
1b
NO_synthase-1jwjB02
B:125-496
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (156 KB)
Header - Asym.Unit
Biol.Unit 1 (149 KB)
Header - Biol.Unit 1
Biol.Unit 2 (149 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1JWJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
