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1JWJ
Asym. Unit
Info
Asym.Unit (156 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
MURINE INDUCIBLE NITRIC OXIDE SYNTHASE OXYGENASE DIMER (DELTA 65) WITH W457F MUTATION AT TETRAHYDROBIOPTERIN BINDING SITE
Authors
:
M. Aoyagi, A. S. Arvai, S. Ghosh, D. J. Stuehr, J. A. Tainer, E. D. Getzoff
Date
:
04 Sep 01 (Deposition) - 31 Oct 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Nitric Oxide L-Arginine Monooxygenase, Heme, Dimer, Nos, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Aoyagi, A. S. Arvai, S. Ghosh, D. J. Stuehr, J. A. Tainer, E. D. Getzof
Structures Of Tetrahydrobiopterin Binding-Site Mutants Of Inducible Nitric Oxide Synthase Oxygenase Dimer And Implicated Roles Of Trp457.
Biochemistry V. 40 12826 2001
(for further references see the
PDB file header
)
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
4a: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Ba)
4b: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bb)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
9
Ligand/Ion
GLYCEROL
4
H4B
2
Ligand/Ion
5,6,7,8-TETRAHYDROBIOPTERIN
5
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:145 , ALA A:151 , HIS A:156
BINDING SITE FOR RESIDUE BOG A 3000
02
AC2
SOFTWARE
LEU A:134 , GLU A:168 , TYR B:145 , ALA B:151 , HIS B:156
BINDING SITE FOR RESIDUE BOG B 3100
03
AC3
SOFTWARE
TRP A:188 , CYS A:194 , SER A:236 , PHE A:363 , ASN A:364 , GLY A:365 , TRP A:366 , GLU A:371 , TYR A:483 , TYR A:485 , H4B A:802 , HOH A:1394 , HOH A:1652 , HOH A:1654 , HOH A:1656 , HOH A:1666 , HOH A:1667 , GOL A:3102
BINDING SITE FOR RESIDUE HEM A 801
04
AC4
SOFTWARE
SER A:112 , MET A:114 , ARG A:375 , ILE A:456 , PHE A:457 , PHE A:470 , HIS A:471 , HEM A:801 , HOH A:1665 , HOH A:1667
BINDING SITE FOR RESIDUE H4B A 802
05
AC5
SOFTWARE
TRP B:188 , CYS B:194 , SER B:236 , PHE B:363 , ASN B:364 , TRP B:366 , GLU B:371 , TYR B:485 , H4B B:902
BINDING SITE FOR RESIDUE HEM B 901
06
AC6
SOFTWARE
SER B:112 , MET B:114 , ARG B:375 , TRP B:455 , ILE B:456 , PHE B:457 , PHE B:470 , HIS B:471 , GLN B:472 , GLU B:473 , HEM B:901 , HOH B:1407 , HOH B:1585 , HOH B:1586
BINDING SITE FOR RESIDUE H4B B 902
07
AC7
SOFTWARE
ASP B:318 , VAL B:320
BINDING SITE FOR RESIDUE EDO B 3112
08
AC8
SOFTWARE
LEU B:110 , GLY B:111 , ASN B:476
BINDING SITE FOR RESIDUE EDO B 3111
09
AC9
SOFTWARE
GLY A:196 , ILE A:198 , GLN A:199 , TRP A:366 , MET A:428 , SER A:436 , HEM A:801 , HOH A:1546
BINDING SITE FOR RESIDUE GOL A 3102
10
BC1
SOFTWARE
GLY A:307 , THR A:492 , HIS A:493 , ILE A:494 , HOH A:1535 , HOH A:1576
BINDING SITE FOR RESIDUE GOL A 3103
11
BC2
SOFTWARE
LYS A:185 , SER A:201 , ASN A:202 , LEU A:203 , GLN A:204 , TYR A:227 , HOH A:1597 , HOH A:1602 , HOH A:1604
BINDING SITE FOR RESIDUE GOL A 3101
12
BC3
SOFTWARE
GLY B:247 , LYS B:248 , GLN B:304 , THR B:492 , HIS B:493 , ILE B:494 , HOH B:1573 , HOH B:1575 , HOH B:1651
BINDING SITE FOR RESIDUE GOL B 3104
13
BC4
SOFTWARE
LEU B:94 , LYS B:97 , ARG B:448 , HOH B:1580
BINDING SITE FOR RESIDUE GOL B 3105
14
BC5
SOFTWARE
LEU B:177 , ARG B:209 , HOH B:1415 , HOH B:1605
BINDING SITE FOR RESIDUE GOL B 3106
15
BC6
SOFTWARE
GLU B:279 , LEU B:283 , ASP B:286 , HOH B:1438 , HOH B:1594
BINDING SITE FOR RESIDUE GOL B 3107
16
BC7
SOFTWARE
ALA B:401 , VAL B:414 , LEU B:417 , HIS B:418 , GLN B:421
BINDING SITE FOR RESIDUE GOL B 3108
17
BC8
SOFTWARE
ASN B:255 , SER B:256 , GLN B:257 , ARG B:260 , PHE B:280 , HOH B:1356
BINDING SITE FOR RESIDUE GOL B 3110
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_NOS2_MOUSE_001 (C211R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NOS2_MOUSE_001
*
C
211
R
NOS2_MOUSE
---
---
A/B
C
211
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NOS (A:193-200,B:193-200)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS2_MOUSE
193-200
2
A:193-200
B:193-200
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1jwja_ (A:)
1b: SCOP_d1jwjb_ (B:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Superfamily
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Family
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Protein domain
:
Nitric oxide (NO) synthase oxygenase domain
(298)
Mouse (Mus musculus) [TaxId: 10090]
(43)
1a
d1jwja_
A:
1b
d1jwjb_
B:
[
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]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1jwjA03 (A:322-344,A:367-432)
1b: CATH_1jwjB03 (B:322-344,B:367-432)
2a: CATH_1jwjA01 (A:83-209,A:236-246,A:350-364,A:434-458)
2b: CATH_1jwjB01 (B:82-209,B:236-246,B:350-364,B:434-458)
3a: CATH_1jwjA02 (A:210-235,A:250-321,A:485-489)
3b: CATH_1jwjB02 (B:210-235,B:250-321,B:485-489)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 3
(105)
House mouse (Mus musculus)
(20)
1a
1jwjA03
A:322-344,A:367-432
1b
1jwjB03
B:322-344,B:367-432
Topology
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
House mouse (Mus musculus)
(20)
2a
1jwjA01
A:83-209,A:236-246,A:350-364,A:434-458
2b
1jwjB01
B:82-209,B:236-246,B:350-364,B:434-458
Topology
:
Nitric Oxide Synthase;Heme Domain; Chain A, domain 2
(105)
Homologous Superfamily
:
Nitric Oxide Synthase;Heme Domain;Chain A domain 2
(105)
House mouse (Mus musculus)
(20)
3a
1jwjA02
A:210-235,A:250-321,A:485-489
3b
1jwjB02
B:210-235,B:250-321,B:485-489
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NO_synthase_1jwjB01 (B:125-496)
1b: PFAM_NO_synthase_1jwjB02 (B:125-496)
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)
Clan
:
no clan defined [family: NO_synthase]
(140)
Family
:
NO_synthase
(140)
Mus musculus (Mouse)
(23)
1a
NO_synthase-1jwjB01
B:125-496
1b
NO_synthase-1jwjB02
B:125-496
[
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