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1JW1
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
CRYSTALLIZATION AND STRUCTURE DETERMINATION OF GOAT LACTOFERRIN AT 4.0 RESOLUTION: A NEW FORM OF PACKING IN LACTOFERRINS WITH A HIGH SOLVENT CONTENT IN CRYSTALS
Authors
:
P. Kumar, S. Yadav, T. P. Singh
Date
:
02 Sep 01 (Deposition) - 29 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Goat Lactoferrin, X-Ray Diffraction, High Solvent Content, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Kumar, S. Yadav, T. P. Singh
Crystallization And Structure Determonation Of Goat Lactoferrin At 4. 0A Resolution: A New Form Of Packing In Lactoferrins With A High Solvent Content In Crystals
Indian J. Biochem. Biophys. V. 39 16 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
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All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
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No.
Name
Count
Type
Full Name
1
FE
2
Ligand/Ion
FE (III) ION
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Sites
(2, 2)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:60 , TYR A:92 , TYR A:192 , HIS A:253
BINDING SITE FOR RESIDUE FE A 690
2
AC2
SOFTWARE
ASP A:395 , TYR A:433 , THR A:464 , TYR A:526 , HIS A:595
BINDING SITE FOR RESIDUE FE A 691
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(4, 8)
Info
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1: TRANSFERRIN_LIKE_4 (A:6-333|A:345-674)
2: TRANSFERRIN_LIKE_1 (A:92-101|A:433-442)
3: TRANSFERRIN_LIKE_2 (A:192-208|A:526-542)
4: TRANSFERRIN_LIKE_3 (A:226-256|A:568-598)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSFERRIN_LIKE_4
PS51408
Transferrin-like domain profile.
TRFL_CAPHI
25-352
364-693
2
A:6-333
A:345-674
2
TRANSFERRIN_LIKE_1
PS00205
Transferrin-like domain signature 1.
TRFL_CAPHI
111-120
452-461
2
A:92-101
A:433-442
3
TRANSFERRIN_LIKE_2
PS00206
Transferrin-like domain signature 2.
TRFL_CAPHI
211-227
545-561
2
A:192-208
A:526-542
4
TRANSFERRIN_LIKE_3
PS00207
Transferrin-like domain signature 3.
TRFL_CAPHI
245-275
587-617
2
A:226-256
A:568-598
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Exons
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SCOP Domains
(1, 2)
Info
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1a: SCOP_d1jw1a1 (A:1-333)
1b: SCOP_d1jw1a2 (A:334-689)
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Protein Domains
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Transferrin
(82)
Protein domain
:
Lactoferrin
(42)
Goat (Capra hircus) [TaxId: 9925]
(1)
1a
d1jw1a1
A:1-333
1b
d1jw1a2
A:334-689
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1jw1A02 (A:92-250)
1b: CATH_1jw1A04 (A:433-594)
1c: CATH_1jw1A01 (A:5-91,A:251-339)
1d: CATH_1jw1A03 (A:340-432,A:595-689)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Goat (Capra hircus)
(1)
1a
1jw1A02
A:92-250
1b
1jw1A04
A:433-594
1c
1jw1A01
A:5-91,A:251-339
1d
1jw1A03
A:340-432,A:595-689
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Transferrin_1jw1A01 (A:345-674)
1b: PFAM_Transferrin_1jw1A02 (A:345-674)
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Clan
:
PBP
(391)
Family
:
Transferrin
(53)
Capra hircus (Goat)
(1)
1a
Transferrin-1jw1A01
A:345-674
1b
Transferrin-1jw1A02
A:345-674
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Chain A
Asymmetric Unit 1
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Asym.Unit (115 KB)
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