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1JVZ
Asym. Unit
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Asym.Unit (123 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
STRUCTURE OF CEPHALOSPORIN ACYLASE IN COMPLEX WITH GLUTARYL-7-AMINOCEPHALOSPORANIC ACID
Authors
:
Y. Kim, W. G. J. Hol
Date
:
01 Sep 01 (Deposition) - 01 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cephalosporin Acylase, Glutaryl-7-Aminocephalosporanic Acid, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, W. G. Hol
Structure Of Cephalosporin Acylase In Complex With Glutaryl-7-Aminocephalosporanic Acid And Glutarate: Insight Into The Basis Of Its Substrate Specificity
Chem. Biol. V. 8 1253 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: 7BETA-(4CARBOXYBUTANAMIDO) CEPHALO... (CENa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
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No.
Name
Count
Type
Full Name
1
CEN
1
Ligand/Ion
7BETA-(4CARBOXYBUTANAMIDO) CEPHALOSPORANIC ACID
2
MSE
13
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:148 , TYR A:149 , SER A:152 , ARG A:155 , SER B:170 , HIS B:192 , LEU B:193 , TYR B:202 , GLN B:219 , ARG B:226 , PHE B:227 , VAL B:239 , HOH B:1304 , HOH B:1305
BINDING SITE FOR RESIDUE CEN B 999
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1jvz_1 (A:,B:)
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Penicillin acylase, catalytic domain
(37)
Protein domain
:
Cephalosporin acylase
(9)
Brevundimonas diminuta [TaxId: 293]
(4)
1a
d1jvz.1
A:,B:
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1jvzB01 (B:170-244,B:311-436,B:620-677)
2a: CATH_1jvzB02 (B:439-619)
3a: CATH_1jvzA00 (A:7-158)
4a: CATH_1jvzB03 (B:245-310)
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Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Brevundimonas diminuta. Organism_taxid: 293.
(4)
1a
1jvzB01
B:170-244,B:311-436,B:620-677
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Penicillin amidase (Acylase) alpha subunit, N-terminal domain
(46)
Homologous Superfamily
:
[code=1.10.1400.10, no name defined]
(46)
Brevundimonas diminuta. Organism_taxid: 293.
(4)
2a
1jvzB02
B:439-619
Topology
:
Penicillin Amidohydrolase; domain 1
(47)
Homologous Superfamily
:
Penicillin Amidohydrolase, domain 1
(47)
Brevundimonas diminuta. Organism_taxid: 293.
(4)
3a
1jvzA00
A:7-158
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Penicillin G acylase, beta-roll domain
(38)
Homologous Superfamily
:
[code=2.30.120.10, no name defined]
(38)
Brevundimonas diminuta. Organism_taxid: 293.
(4)
4a
1jvzB03
B:245-310
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Pfam Domains
(0, 0)
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Asym.Unit (123 KB)
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