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1JVO
Biol. Unit 2
Info
Asym.Unit (242 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (82 KB)
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(1)
Title
:
AZURIN DIMER, CROSSLINKED VIA DISULFIDE BRIDGE
Authors
:
I. M. C. Van Amsterdam, M. Ubbink, O. Einsle, A. Messerschmidt, A. Merli, D. Cavazzini, G. L. Rossi, G. W. Canters
Date
:
30 Aug 01 (Deposition) - 04 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Cupredoxin, Electron Transfer, Covalent Crosslink, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. M. C. Van Amsterdam, M. Ubbink, O. Einsle, A. Messerschmidt, A. Merli, D. Cavazzini, G. L. Rossi, G. W. Canters
Dramatic Modulation Of Electron Transfer In Protein Complexes By Crosslinking
Nat. Struct. Biol. V. 9 48 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
1h: COPPER (II) ION (CUh)
1i: COPPER (II) ION (CUi)
1j: COPPER (II) ION (CUj)
1k: COPPER (II) ION (CUk)
1l: COPPER (II) ION (CUl)
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Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
GLY E:45 , HIS E:46 , CYS E:112 , HIS E:117 , MET E:121
BINDING SITE FOR RESIDUE CU E 129
2
AC6
SOFTWARE
GLY F:45 , HIS F:46 , CYS F:112 , HIS F:117 , MET F:121
BINDING SITE FOR RESIDUE CU F 129
3
AC7
SOFTWARE
GLY G:45 , HIS G:46 , CYS G:112 , HIS G:117 , MET G:121
BINDING SITE FOR RESIDUE CU G 129
4
AC8
SOFTWARE
GLY H:45 , HIS H:46 , CYS H:112 , HIS H:117 , MET H:121
BINDING SITE FOR RESIDUE CU H 129
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: COPPER_BLUE (E:105-121,F:105-121,G:105-121,H:10...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_BLUE
PS00196
Type-1 copper (blue) proteins signature.
AZUR_PSEAE
125-141
4
-
-
-
-
E:105-121
F:105-121
G:105-121
H:105-121
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1jvoa_ (A:)
1b: SCOP_d1jvob_ (B:)
1c: SCOP_d1jvoc_ (C:)
1d: SCOP_d1jvod_ (D:)
1e: SCOP_d1jvoe_ (E:)
1f: SCOP_d1jvof_ (F:)
1g: SCOP_d1jvog_ (G:)
1h: SCOP_d1jvoh_ (H:)
1i: SCOP_d1jvoi_ (I:)
1j: SCOP_d1jvoj_ (J:)
1k: SCOP_d1jvok_ (K:)
1l: SCOP_d1jvol_ (L:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Plastocyanin/azurin-like
(241)
Protein domain
:
Azurin
(95)
Pseudomonas aeruginosa [TaxId: 287]
(78)
1a
d1jvoa_
A:
1b
d1jvob_
B:
1c
d1jvoc_
C:
1d
d1jvod_
D:
1e
d1jvoe_
E:
1f
d1jvof_
F:
1g
d1jvog_
G:
1h
d1jvoh_
H:
1i
d1jvoi_
I:
1j
d1jvoj_
J:
1k
d1jvok_
K:
1l
d1jvol_
L:
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1jvoA00 (A:1-128)
1b: CATH_1jvoB00 (B:1-128)
1c: CATH_1jvoC00 (C:1-128)
1d: CATH_1jvoD00 (D:1-128)
1e: CATH_1jvoE00 (E:1-128)
1f: CATH_1jvoF00 (F:1-128)
1g: CATH_1jvoG00 (G:1-128)
1h: CATH_1jvoH00 (H:1-128)
1i: CATH_1jvoI00 (I:1-128)
1j: CATH_1jvoJ00 (J:1-128)
1k: CATH_1jvoK00 (K:1-128)
1l: CATH_1jvoL00 (L:1-128)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Pseudomonas aeruginosa. Organism_taxid: 287.
(36)
1a
1jvoA00
A:1-128
1b
1jvoB00
B:1-128
1c
1jvoC00
C:1-128
1d
1jvoD00
D:1-128
1e
1jvoE00
E:1-128
1f
1jvoF00
F:1-128
1g
1jvoG00
G:1-128
1h
1jvoH00
H:1-128
1i
1jvoI00
I:1-128
1j
1jvoJ00
J:1-128
1k
1jvoK00
K:1-128
1l
1jvoL00
L:1-128
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Copper_bind_1jvoL01 (L:1-128)
1b: PFAM_Copper_bind_1jvoL02 (L:1-128)
1c: PFAM_Copper_bind_1jvoL03 (L:1-128)
1d: PFAM_Copper_bind_1jvoL04 (L:1-128)
1e: PFAM_Copper_bind_1jvoL05 (L:1-128)
1f: PFAM_Copper_bind_1jvoL06 (L:1-128)
1g: PFAM_Copper_bind_1jvoL07 (L:1-128)
1h: PFAM_Copper_bind_1jvoL08 (L:1-128)
1i: PFAM_Copper_bind_1jvoL09 (L:1-128)
1j: PFAM_Copper_bind_1jvoL10 (L:1-128)
1k: PFAM_Copper_bind_1jvoL11 (L:1-128)
1l: PFAM_Copper_bind_1jvoL12 (L:1-128)
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(
)
Organisms
(
)
(
)
Clan
:
CU_oxidase
(192)
Family
:
Copper-bind
(82)
Pseudomonas aeruginosa
(25)
1a
Copper-bind-1jvoL01
L:1-128
1b
Copper-bind-1jvoL02
L:1-128
1c
Copper-bind-1jvoL03
L:1-128
1d
Copper-bind-1jvoL04
L:1-128
1e
Copper-bind-1jvoL05
L:1-128
1f
Copper-bind-1jvoL06
L:1-128
1g
Copper-bind-1jvoL07
L:1-128
1h
Copper-bind-1jvoL08
L:1-128
1i
Copper-bind-1jvoL09
L:1-128
1j
Copper-bind-1jvoL10
L:1-128
1k
Copper-bind-1jvoL11
L:1-128
1l
Copper-bind-1jvoL12
L:1-128
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Asymmetric Unit 1
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Asym.Unit (242 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
Header - Biol.Unit 3
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