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1JVD
Asym. Unit
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Asym.Unit (169 KB)
Biol.Unit 1 (163 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN AGX2 COMPLEXED WITH UDPGLCNAC
Authors
:
C. Peneff, Y. Bourne
Date
:
29 Aug 01 (Deposition) - 29 Aug 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nucleotidyltransferase, Alternative Splicing
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Peneff, P. Ferrari, V. Charrier, Y. Taburet, C. Monnier, V. Zamboni, J. Winter, M. Harnois, F. Fassy, Y. Bourne
Crystal Structures Of Two Human Pyrophosphorylase Isoforms In Complexes With Udpglc(Gal)Nac: Role Of The Alternatively Spliced Insert In The Enzyme Oligomeric Assembly And Active Site Architecture.
Embo J. V. 20 6191 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
1b: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
UD1
2
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:108 , ALA A:109 , GLY A:110 , MET A:165 , GLN A:196 , PRO A:220 , GLY A:222 , ASN A:223 , CYS A:251 , VAL A:252 , VAL A:289 , GLY A:290 , GLU A:303 , TYR A:304 , ASN A:327 , PHE A:381 , PHE A:383 , PHE A:403 , LYS A:407 , HOH A:931 , HOH A:972 , HOH A:1020 , ARG B:453
BINDING SITE FOR RESIDUE UD1 A 901
2
AC2
SOFTWARE
ARG A:453 , LEU B:108 , ALA B:109 , GLY B:110 , GLY B:111 , MET B:165 , GLN B:196 , PRO B:220 , GLY B:222 , ASN B:223 , CYS B:251 , VAL B:252 , VAL B:289 , GLY B:290 , GLU B:303 , TYR B:304 , ASN B:327 , PHE B:381 , PHE B:383 , PHE B:403 , LYS B:407 , HOH B:916 , HOH B:939 , HOH B:1019
BINDING SITE FOR RESIDUE UD1 B 902
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014935 (P418H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014935
P
418
H
UAP1_HUMAN
Polymorphism
1128539
A/B
P
418
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(10, 20)
Info
All Exons
Exon 1.3b (A:2-94 (gaps) | B:2-94 (gaps))
Exon 1.4 (A:94-162 (gaps) | B:94-162 (gaps))
Exon 1.5b (A:162-221 | B:162-221)
Exon 1.6a (A:221-278 | B:221-278)
Exon 1.7a (A:279-343 | B:279-343)
Exon 1.8 (A:343-390 | B:343-390)
Exon 1.9 (A:390-453 | B:390-453)
Exon 1.10a (A:453-456 | B:453-453)
Exon 1.11b (A:477-492 | B:477-492)
Exon 1.12b (A:493-517 | B:493-518)
View:
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All Exon Boundaries
01: Boundary -/1.3b
02: Boundary 1.3b/1.4
03: Boundary 1.4/1.5b
04: Boundary 1.5b/1.6a
05: Boundary 1.6a/1.7a
06: Boundary 1.7a/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10a
09: Boundary 1.10a/1.11b
10: Boundary 1.11b/1.12b
11: Boundary 1.12b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000367925
3b
ENSE00001445937
chr1:
162535827-162536138
312
UAP1_HUMAN
1-94
94
2
A:2-94 (gaps)
B:2-94 (gaps)
93
93
1.4
ENST00000367925
4
ENSE00000958805
chr1:
162546567-162546771
205
UAP1_HUMAN
94-162
69
2
A:94-162 (gaps)
B:94-162 (gaps)
69
69
1.5b
ENST00000367925
5b
ENSE00000958806
chr1:
162549218-162549393
176
UAP1_HUMAN
162-221
60
2
A:162-221
B:162-221
60
60
1.6a
ENST00000367925
6a
ENSE00000958807
chr1:
162551077-162551249
173
UAP1_HUMAN
221-278
58
2
A:221-278
B:221-278
58
58
1.7a
ENST00000367925
7a
ENSE00000958808
chr1:
162557265-162557458
194
UAP1_HUMAN
279-343
65
2
A:279-343
B:279-343
65
65
1.8
ENST00000367925
8
ENSE00000958809
chr1:
162558483-162558623
141
UAP1_HUMAN
343-390
48
2
A:343-390
B:343-390
48
48
1.9
ENST00000367925
9
ENSE00000958810
chr1:
162560113-162560301
189
UAP1_HUMAN
390-453
64
2
A:390-453
B:390-453
64
64
1.10a
ENST00000367925
10a
ENSE00000958811
chr1:
162562522-162562572
51
UAP1_HUMAN
453-470
18
2
A:453-456
B:453-453
4
1
1.11b
ENST00000367925
11b
ENSE00000958812
chr1:
162567582-162567648
67
UAP1_HUMAN
470-492
23
2
A:477-492
B:477-492
16
16
1.12b
ENST00000367925
12b
ENSE00001445936
chr1:
162569061-162569621
561
UAP1_HUMAN
493-522
30
2
A:493-517
B:493-518
25
26
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1jvda_ (A:)
1b: SCOP_d1jvdb_ (B:)
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)
(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
UDP-glucose pyrophosphorylase
(25)
Protein domain
:
UDP-N-acetylglucosamine pyrophosphorylase
(5)
Human (Homo sapiens), AGX2 [TaxId: 9606]
(2)
1a
d1jvda_
A:
1b
d1jvdb_
B:
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1jvdA01 (A:2-437)
1b: CATH_1jvdB01 (B:2-437)
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(
)
(
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Human (Homo sapiens)
(73)
1a
1jvdA01
A:2-437
1b
1jvdB01
B:2-437
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_UDPGP_1jvdB01 (B:44-453)
1b: PFAM_UDPGP_1jvdB02 (B:44-453)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
UDPGP
(13)
Homo sapiens (Human)
(2)
1a
UDPGP-1jvdB01
B:44-453
1b
UDPGP-1jvdB02
B:44-453
[
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]
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Nucleic
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Asymmetric Unit 1
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Asym.Unit (169 KB)
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