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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
1JV2
Asym. Unit
Info
Asym.Unit (248 KB)
Biol.Unit 1 (239 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRIN ALPHAVBETA3
Authors
:
J. P. Xiong, T. Stehle, B. Diefenbach, R. Zhang, R. Dunker, D. Scott, A. Joachimiak, S. L. Goodman, M. A. Arnaout
Date
:
28 Aug 01 (Deposition) - 17 Oct 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Genu, Hybrid Domain, Beta-Tail Domain, Psi Domain, Egf Domain, Midas, Admidas, Cage Motif, Propeller, A-Domain, Thigh Domain, Calf Domain, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Xiong, T. Stehle, B. Diefenbach, R. Zhang, R. Dunker, D. L. Scott, A. Joachimiak, S. L. Goodman, M. A. Arnaout
Crystal Structure Of The Extracellular Segment Of Integrin Alpha Vbeta3.
Science V. 294 339 2001
[
close entry info
]
Hetero Components
(3, 24)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
3
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:42 , ASN A:44 , GLU A:52 , NAG A:2045
BINDING SITE FOR RESIDUE NAG A 2044
02
AC2
SOFTWARE
HIS A:91 , NAG A:2044
BINDING SITE FOR RESIDUE NAG A 2045
03
AC3
SOFTWARE
ASN A:260
BINDING SITE FOR RESIDUE NAG A 2260
04
AC4
SOFTWARE
PHE A:217 , MET A:252 , TYR A:254 , SER A:263 , LEU A:264 , ASN A:266 , NAG A:2267
BINDING SITE FOR RESIDUE NAG A 2266
05
AC5
SOFTWARE
ALA A:213 , GLN A:214 , PHE A:217 , NAG A:2266
BINDING SITE FOR RESIDUE NAG A 2267
06
AC6
SOFTWARE
PRO A:451 , ILE A:453 , LEU A:454 , ASN A:455 , ASN A:458 , THR A:460 , SER A:471 , CYS A:472
BINDING SITE FOR RESIDUE NAG A 2458
07
AC7
SOFTWARE
GLU A:560 , ALA A:584 , ASN A:585 , NAG A:2586
BINDING SITE FOR RESIDUE NAG A 2585
08
AC8
SOFTWARE
NAG A:2585
BINDING SITE FOR RESIDUE NAG A 2586
09
AC9
SOFTWARE
THR A:942 , ASN A:943 , NDG A:2944
BINDING SITE FOR RESIDUE NAG A 2943
10
BC1
SOFTWARE
NAG A:2943
BINDING SITE FOR RESIDUE NDG A 2944
11
BC2
SOFTWARE
ASP A:751 , THR A:948 , ASN A:950 , NAG A:2951
BINDING SITE FOR RESIDUE NAG A 2950
12
BC3
SOFTWARE
NAG A:2950
BINDING SITE FOR RESIDUE NAG A 2951
13
BC4
SOFTWARE
ARG A:248 , MET A:272 , ASN B:320
BINDING SITE FOR RESIDUE NAG B 3320
14
BC5
SOFTWARE
ASN B:371 , GLU B:400
BINDING SITE FOR RESIDUE NAG B 3371
15
BC6
SOFTWARE
TYR B:557 , ASN B:559 , NDG B:3560
BINDING SITE FOR RESIDUE NAG B 3559
16
BC7
SOFTWARE
PRO A:624 , NAG B:3559
BINDING SITE FOR RESIDUE NDG B 3560
17
BC8
SOFTWARE
LYS B:646 , ASP B:647 , THR B:648 , GLY B:649 , LYS B:650 , ASN B:654 , NDG B:3655
BINDING SITE FOR RESIDUE NAG B 3654
18
BC9
SOFTWARE
LEU B:645 , LYS B:646 , ASP B:647 , THR B:648 , NAG B:3654
BINDING SITE FOR RESIDUE NDG B 3655
19
CC1
SOFTWARE
SER B:123 , ASP B:126 , ASP B:127 , MET B:335
BINDING SITE FOR RESIDUE CA B 4002
20
CC2
SOFTWARE
ASP A:230 , ASN A:232 , ILE A:236 , ASP A:238
BINDING SITE FOR RESIDUE CA A 4004
21
CC3
SOFTWARE
ASP A:284 , ASN A:286 , ASP A:288 , TYR A:290 , ASP A:292
BINDING SITE FOR RESIDUE CA A 4005
22
CC4
SOFTWARE
ASP A:349 , ASP A:351 , ASP A:353 , PHE A:355 , ASN A:356 , ASP A:357 , ASN A:377
BINDING SITE FOR RESIDUE CA A 4006
23
CC5
SOFTWARE
ASP A:413 , ASP A:415 , ASN A:417 , TYR A:419 , PRO A:420 , ASP A:421
BINDING SITE FOR RESIDUE CA A 4007
24
CC6
SOFTWARE
CYS A:596 , GLY A:597 , ASP A:599 , ASN A:600 , VAL A:601 , GLU A:636
BINDING SITE FOR RESIDUE CA A 4008
[
close Site info
]
SAPs(SNPs)/Variants
(34, 34)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_030473 (R93W, chain B, )
02: VAR_030474 (Y115C, chain B, )
03: VAR_010649 (L117W, chain B, )
04: VAR_069921 (M118R, chain B, )
05: VAR_030475 (D119N, chain B, )
06: VAR_003998 (D119Y, chain B, )
07: VAR_030476 (M124V, chain B, )
08: VAR_030477 (T140I, chain B, )
09: VAR_003994 (R143Q, chain B, )
10: VAR_010651 (S162L, chain B, )
11: VAR_030478 (L196P, chain B, )
12: VAR_003999 (R214Q, chain B, )
13: VAR_004000 (R214W, chain B, )
14: VAR_030479 (R216Q, chain B, )
15: VAR_030480 (D217V, chain B, )
16: VAR_069922 (G221D, chain B, )
17: VAR_069923 (K253M, chain B, )
18: VAR_030481 (L262P, chain B, )
19: VAR_004001 (H280P, chain B, )
20: VAR_030482 (M295L, chain B, )
21: VAR_030483 (I304N, chain B, )
22: VAR_004002 (C374Y, chain B, )
23: VAR_024289 (I375V, chain A, )
24: VAR_003995 (P407A, chain B, )
25: VAR_014178 (V427I, chain B, )
26: VAR_055970 (S518A, chain A, )
27: VAR_010671 (C542R, chain B, )
28: VAR_004003 (C560F, chain B, )
29: VAR_030485 (C560R, chain B, )
30: VAR_004004 (G572S, chain B, )
31: VAR_030486 (C575R, chain B, )
32: VAR_010672 (G579S, chain B, )
33: VAR_003997 (R636C, chain B, )
34: VAR_031547 (V753I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_030473
R
119
W
ITB3_HUMAN
Disease (GT)
---
B
R
93
W
02
UniProt
VAR_030474
Y
141
C
ITB3_HUMAN
Disease (GT)
---
B
Y
115
C
03
UniProt
VAR_010649
L
143
W
ITB3_HUMAN
Disease (GT)
---
B
L
117
W
04
UniProt
VAR_069921
M
144
R
ITB3_HUMAN
Disease (GT)
---
B
M
118
R
05
UniProt
VAR_030475
D
145
N
ITB3_HUMAN
Disease (GT)
---
B
D
119
N
06
UniProt
VAR_003998
D
145
Y
ITB3_HUMAN
Disease (GT)
---
B
D
119
Y
07
UniProt
VAR_030476
M
150
V
ITB3_HUMAN
Disease (GT)
---
B
M
124
V
08
UniProt
VAR_030477
T
166
I
ITB3_HUMAN
Unclassified
---
B
T
140
I
09
UniProt
VAR_003994
R
169
Q
ITB3_HUMAN
Polymorphism
5917
B
R
143
Q
10
UniProt
VAR_010651
S
188
L
ITB3_HUMAN
Disease (GT)
---
B
S
162
L
11
UniProt
VAR_030478
L
222
P
ITB3_HUMAN
Disease (GT)
---
B
L
196
P
12
UniProt
VAR_003999
R
240
Q
ITB3_HUMAN
Disease (GT)
---
B
R
214
Q
13
UniProt
VAR_004000
R
240
W
ITB3_HUMAN
Disease (GT)
---
B
R
214
W
14
UniProt
VAR_030479
R
242
Q
ITB3_HUMAN
Disease (GT)
---
B
R
216
Q
15
UniProt
VAR_030480
D
243
V
ITB3_HUMAN
Disease (GT)
---
B
D
217
V
16
UniProt
VAR_069922
G
247
D
ITB3_HUMAN
Disease (GT)
---
B
G
221
D
17
UniProt
VAR_069923
K
279
M
ITB3_HUMAN
Disease (GT)
---
B
K
253
M
18
UniProt
VAR_030481
L
288
P
ITB3_HUMAN
Disease (GT)
---
B
L
262
P
19
UniProt
VAR_004001
H
306
P
ITB3_HUMAN
Disease (GT)
13306476
B
H
280
P
20
UniProt
VAR_030482
M
321
L
ITB3_HUMAN
Disease (GT)
---
B
M
295
L
21
UniProt
VAR_030483
I
330
N
ITB3_HUMAN
Disease (GT)
---
B
I
304
N
22
UniProt
VAR_004002
C
400
Y
ITB3_HUMAN
Disease (GT)
---
B
C
374
Y
23
UniProt
VAR_024289
I
405
V
ITAV_HUMAN
Polymorphism
3738918
A
I
375
V
24
UniProt
VAR_003995
P
433
A
ITB3_HUMAN
Polymorphism
121918448
B
P
407
A
25
UniProt
VAR_014178
V
453
I
ITB3_HUMAN
Polymorphism
5921
B
V
427
I
26
UniProt
VAR_055970
S
548
A
ITAV_HUMAN
Polymorphism
2230615
A
S
518
A
27
UniProt
VAR_010671
C
568
R
ITB3_HUMAN
Disease (GT)
---
B
C
542
R
28
UniProt
VAR_004003
C
586
F
ITB3_HUMAN
Disease (GT)
---
B
C
560
F
29
UniProt
VAR_030485
C
586
R
ITB3_HUMAN
Disease (GT)
---
B
C
560
R
30
UniProt
VAR_004004
G
598
S
ITB3_HUMAN
Disease (GT)
---
B
G
572
S
31
UniProt
VAR_030486
C
601
R
ITB3_HUMAN
Disease (GT)
---
B
C
575
R
32
UniProt
VAR_010672
G
605
S
ITB3_HUMAN
Disease (GT)
---
B
G
579
S
33
UniProt
VAR_003997
R
662
C
ITB3_HUMAN
Polymorphism
151219882
B
R
636
C
34
UniProt
VAR_031547
V
783
I
ITAV_HUMAN
Polymorphism
2230616
A
V
753
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 10)
Info
All PROSITE Patterns/Profiles
1: FG_GAP (A:2-68|A:79-140|A:262-327|A:207-26...)
2: EGF_1 (-|B:547-558)
3: INTEGRIN_BETA (-|B:536-549|B:575-588)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FG_GAP
PS51470
FG-GAP repeat profile.
ITAV_HUMAN
32-98
109-170
292-357
237-291
173-225
358-415
419-482
7
A:2-68
A:79-140
A:262-327
A:207-261
A:143-195
A:328-385
A:389-452
2
EGF_1
PS00022
EGF-like domain signature 1.
ITB3_HUMAN
486-497
573-584
1
-
B:547-558
3
INTEGRIN_BETA
PS00243
Integrins beta chain cysteine-rich domain signature.
ITB3_HUMAN
521-534
562-575
601-614
2
-
B:536-549
B:575-588
[
close PROSITE info
]
Exons
(29, 29)
Info
All Exons
Exon 1.1a (A:1-32)
Exon 1.3 (A:32-76)
Exon 1.4 (A:76-106)
Exon 1.5 (A:107-145)
Exon 1.6 (A:145-165)
Exon 1.7 (A:166-181)
Exon 1.8 (A:181-223)
Exon 1.9 (A:223-238)
Exon 1.10 (A:238-252)
Exon 1.11 (A:253-271)
Exon 1.12 (A:272-289)
Exon 1.13 (A:289-357)
Exon 1.14 (A:357-421)
Exon 1.15 (A:421-436)
Exon 1.16 (A:436-472)
Exon 1.17 (A:472-492)
Exon 1.18 (A:492-543)
Exon 1.19 (A:544-589)
Exon 1.20 (A:590-612)
Exon 1.21 (A:612-661)
Exon 1.22 (A:662-692)
Exon 1.23 (A:693-719)
Exon 1.24 (A:719-746)
Exon 1.25b (A:746-781)
Exon 1.26b (A:782-834)
Exon 1.27a (A:835-872 (gaps))
Exon 1.28b (A:873-910)
Exon 1.29a (A:911-946)
Exon 1.30 (A:947-956)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14
14: Boundary 1.14/1.15
15: Boundary 1.15/1.16
16: Boundary 1.16/1.17
17: Boundary 1.17/1.18
18: Boundary 1.18/1.19
19: Boundary 1.19/1.20
20: Boundary 1.20/1.21
21: Boundary 1.21/1.22
22: Boundary 1.22/1.23
23: Boundary 1.23/1.24
24: Boundary 1.24/1.25b
25: Boundary 1.25b/1.26b
26: Boundary 1.26b/1.27a
27: Boundary 1.27a/1.28b
28: Boundary 1.28b/1.29a
29: Boundary 1.29a/1.30
30: Boundary 1.30/1.31c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000261023
1a
ENSE00001153135
chr2:
187454792-187455250
459
ITAV_HUMAN
1-62
62
1
A:1-32
32
1.3
ENST00000261023
3
ENSE00000934420
chr2:
187466748-187466878
131
ITAV_HUMAN
62-106
45
1
A:32-76
45
1.4
ENST00000261023
4
ENSE00000934421
chr2:
187487066-187487157
92
ITAV_HUMAN
106-136
31
1
A:76-106
31
1.5
ENST00000261023
5
ENSE00000934422
chr2:
187490200-187490314
115
ITAV_HUMAN
137-175
39
1
A:107-145
39
1.6
ENST00000261023
6
ENSE00000934423
chr2:
187495524-187495585
62
ITAV_HUMAN
175-195
21
1
A:145-165
21
1.7
ENST00000261023
7
ENSE00000934424
chr2:
187498056-187498101
46
ITAV_HUMAN
196-211
16
1
A:166-181
16
1.8
ENST00000261023
8
ENSE00000934425
chr2:
187500809-187500934
126
ITAV_HUMAN
211-253
43
1
A:181-223
43
1.9
ENST00000261023
9
ENSE00000934426
chr2:
187501792-187501836
45
ITAV_HUMAN
253-268
16
1
A:223-238
16
1.10
ENST00000261023
10
ENSE00000934427
chr2:
187503004-187503047
44
ITAV_HUMAN
268-282
15
1
A:238-252
15
1.11
ENST00000261023
11
ENSE00000934428
chr2:
187503136-187503192
57
ITAV_HUMAN
283-301
19
1
A:253-271
19
1.12
ENST00000261023
12
ENSE00000934429
chr2:
187505642-187505694
53
ITAV_HUMAN
302-319
18
1
A:272-289
18
1.13
ENST00000261023
13
ENSE00000934430
chr2:
187506113-187506315
203
ITAV_HUMAN
319-387
69
1
A:289-357
69
1.14
ENST00000261023
14
ENSE00000934431
chr2:
187511413-187511604
192
ITAV_HUMAN
387-451
65
1
A:357-421
65
1.15
ENST00000261023
15
ENSE00000783598
chr2:
187514567-187514612
46
ITAV_HUMAN
451-466
16
1
A:421-436
16
1.16
ENST00000261023
16
ENSE00000783599
chr2:
187516709-187516816
108
ITAV_HUMAN
466-502
37
1
A:436-472
37
1.17
ENST00000261023
17
ENSE00000783600
chr2:
187519377-187519435
59
ITAV_HUMAN
502-522
21
1
A:472-492
21
1.18
ENST00000261023
18
ENSE00000783601
chr2:
187520974-187521128
155
ITAV_HUMAN
522-573
52
1
A:492-543
52
1.19
ENST00000261023
19
ENSE00000934432
chr2:
187523765-187523902
138
ITAV_HUMAN
574-619
46
1
A:544-589
46
1.20
ENST00000261023
20
ENSE00000934433
chr2:
187528495-187528562
68
ITAV_HUMAN
620-642
23
1
A:590-612
23
1.21
ENST00000261023
21
ENSE00000934434
chr2:
187529221-187529368
148
ITAV_HUMAN
642-691
50
1
A:612-661
50
1.22
ENST00000261023
22
ENSE00000934435
chr2:
187529853-187529945
93
ITAV_HUMAN
692-722
31
1
A:662-692
31
1.23
ENST00000261023
23
ENSE00000783606
chr2:
187531431-187531510
80
ITAV_HUMAN
723-749
27
1
A:693-719
27
1.24
ENST00000261023
24
ENSE00000783607
chr2:
187531877-187531957
81
ITAV_HUMAN
749-776
28
1
A:719-746
28
1.25b
ENST00000261023
25b
ENSE00000783608
chr2:
187532398-187532503
106
ITAV_HUMAN
776-811
36
1
A:746-781
36
1.26b
ENST00000261023
26b
ENSE00000783609
chr2:
187533489-187533647
159
ITAV_HUMAN
812-864
53
1
A:782-834
53
1.27a
ENST00000261023
27a
ENSE00000783610
chr2:
187534428-187534541
114
ITAV_HUMAN
865-902
38
1
A:835-872 (gaps)
38
1.28b
ENST00000261023
28b
ENSE00000783611
chr2:
187540331-187540444
114
ITAV_HUMAN
903-940
38
1
A:873-910
38
1.29a
ENST00000261023
29a
ENSE00000783612
chr2:
187540547-187540654
108
ITAV_HUMAN
941-976
36
1
A:911-946
36
1.30
ENST00000261023
30
ENSE00000783613
chr2:
187541540-187541662
123
ITAV_HUMAN
977-1017
41
1
A:947-956
10
1.31c
ENST00000261023
31c
ENSE00001936662
chr2:
187541924-187545628
3705
ITAV_HUMAN
1018-1048
31
0
-
-
[
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SCOP Domains
(6, 9)
Info
All SCOP Domains
1a: SCOP_d1jv2a4 (A:1-438)
2a: SCOP_d1jv2b1 (B:55-106,B:355-434)
3a: SCOP_d1jv2a1 (A:439-598)
3b: SCOP_d1jv2a2 (A:599-737)
3c: SCOP_d1jv2a3 (A:738-956)
4a: SCOP_d1jv2b3 (B:606-690)
5a: SCOP_d1jv2b2 (B:107-354)
6a: SCOP_d1jv2b4 (B:532-562)
6b: SCOP_d1jv2b5 (B:563-605)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Integrin alpha N-terminal domain
(24)
Family
:
Integrin alpha N-terminal domain
(23)
Protein domain
:
Integrin alpha N-terminal domain
(21)
Human (Homo sapiens), isoform V [TaxId: 9606]
(4)
1a
d1jv2a4
A:1-438
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Integrin domains
(12)
Family
:
Integrin domains
(9)
Protein domain
:
Hybrid domain of integrin beta
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1jv2b1
B:55-106,B:355-434
Protein domain
:
Thigh, calf-1 and calf-2 domains of integrin alpha
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d1jv2a1
A:439-598
3b
d1jv2a2
A:599-737
3c
d1jv2a3
A:738-956
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Integrin beta tail domain
(4)
Superfamily
:
Integrin beta tail domain
(4)
Family
:
Integrin beta tail domain
(4)
Protein domain
:
Integrin beta tail domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
4a
d1jv2b3
B:606-690
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
vWA-like
(111)
Superfamily
:
vWA-like
(111)
Family
:
Integrin A (or I) domain
(84)
Protein domain
:
Integrin beta A domain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
5a
d1jv2b2
B:107-354
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
Integrin beta EGF-like domains
(5)
Protein domain
:
Integrin beta EGF-like domains
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
6a
d1jv2b4
B:532-562
6b
d1jv2b5
B:563-605
[
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CATH Domains
(5, 5)
Info
all CATH domains
1a: CATH_1jv2B02 (B:109-352)
2a: CATH_1jv2A01 (A:1-438)
3a: CATH_1jv2A02 (A:439-599)
4a: CATH_1jv2A03 (A:600-739)
5a: CATH_1jv2A04 (A:740-956)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.410, no name defined]
(87)
Human (Homo sapiens)
(66)
1a
1jv2B02
B:109-352
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
Integrin alpha N-terminal domain, Chain A
(15)
Human (Homo sapiens)
(15)
2a
1jv2A01
A:1-438
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Integrin domains. Chain A, domain 2
(4)
Human (Homo sapiens)
(4)
3a
1jv2A02
A:439-599
Homologous Superfamily
:
ntegrin, alpha v. Chain A, domain 3
(4)
Human (Homo sapiens)
(4)
4a
1jv2A03
A:600-739
Homologous Superfamily
:
ntegrin, alpha v. Chain A, domain 4
(4)
Human (Homo sapiens)
(4)
5a
1jv2A04
A:740-956
[
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]
Pfam Domains
(4, 6)
Info
all PFAM domains
1a: PFAM_FG_GAP_1jv2A01 (A:340-376)
1b: PFAM_FG_GAP_1jv2A02 (A:340-376)
1c: PFAM_FG_GAP_1jv2A03 (A:340-376)
2a: PFAM_Integrin_alpha2_1jv2A04 (A:437-884)
3a: PFAM_Integrin_B_tail_1jv2B01 (B:608-690)
4a: PFAM_Integrin_beta_1jv2B02 (B:55-434)
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Clans
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(
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Families
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(
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Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
FG-GAP
(14)
Homo sapiens (Human)
(14)
1a
FG-GAP-1jv2A01
A:340-376
1b
FG-GAP-1jv2A02
A:340-376
1c
FG-GAP-1jv2A03
A:340-376
Clan
:
E-set
(290)
Family
:
Integrin_alpha2
(14)
Homo sapiens (Human)
(14)
2a
Integrin_alpha2-1jv2A04
A:437-884
Clan
:
no clan defined [family: Integrin_B_tail]
(8)
Family
:
Integrin_B_tail
(8)
Homo sapiens (Human)
(8)
3a
Integrin_B_tail-1jv2B01
B:608-690
Clan
:
no clan defined [family: Integrin_beta]
(18)
Family
:
Integrin_beta
(18)
Homo sapiens (Human)
(18)
4a
Integrin_beta-1jv2B02
B:55-434
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