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1JUO
Asym. Unit
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Asym.Unit (65 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CALCIUM-FREE HUMAN SORCIN: A MEMBER OF THE PENTA-EF-HAND PROTEIN FAMILY
Authors
:
X. Xie
Date
:
24 Aug 01 (Deposition) - 30 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Calcium-Binding Proteins, Penta-Ef-Hand, Pef, X-Ray, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Xie, M. D. Dwyer, L. Swenson, M. H. Parker, M. C. Botfield
Crystal Structure Of Calcium-Free Human Sorcin: A Member Of The Penta-Ef-Hand Protein Family.
Protein Sci. V. 10 2419 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:45-64,B:45-64|A:100-135,B:100-13...)
2: EF_HAND_1 (A:83-95,B:83-95|A:113-125,B:113-12...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
SORCN_HUMAN
45-64
100-135
70-98
151-169
8
A:45-64
B:45-64
A:100-135
B:100-135
A:70-98
B:70-98
A:151-169
B:151-169
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
SORCN_HUMAN
83-95
113-125
4
A:83-95
B:83-95
A:113-125
B:113-125
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Exons
(7, 14)
Info
All Exons
Exon 1.3 (A:27-45 | B:27-45)
Exon 1.4 (A:46-69 | B:46-69)
Exon 1.6a (A:69-83 | B:69-83)
Exon 1.7c (A:84-133 | B:84-133)
Exon 1.8a (A:133-171 | B:133-171)
Exon 1.9a (A:171-190 | B:171-190)
Exon 1.10e (A:191-198 | B:191-198)
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All Exon Boundaries
1: Boundary 1.2a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.6a
4: Boundary 1.6a/1.7c
5: Boundary 1.7c/1.8a
6: Boundary 1.8a/1.9a
7: Boundary 1.9a/1.10e
8: Boundary 1.10e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000265729
2a
ENSE00000877269
chr7:
87849394-87849291
104
SORCN_HUMAN
1-17
17
0
-
-
1.3
ENST00000265729
3
ENSE00000454471
chr7:
87848257-87848174
84
SORCN_HUMAN
18-45
28
2
A:27-45
B:27-45
19
19
1.4
ENST00000265729
4
ENSE00001650311
chr7:
87846506-87846437
70
SORCN_HUMAN
46-69
24
2
A:46-69
B:46-69
24
24
1.6a
ENST00000265729
6a
ENSE00001746532
chr7:
87840240-87840197
44
SORCN_HUMAN
69-83
15
2
A:69-83
B:69-83
15
15
1.7c
ENST00000265729
7c
ENSE00001612675
chr7:
87839445-87839298
148
SORCN_HUMAN
84-133
50
2
A:84-133
B:84-133
50
50
1.8a
ENST00000265729
8a
ENSE00001711742
chr7:
87838767-87838654
114
SORCN_HUMAN
133-171
39
2
A:133-171
B:133-171
39
39
1.9a
ENST00000265729
9a
ENSE00001618133
chr7:
87837880-87837822
59
SORCN_HUMAN
171-190
20
2
A:171-190
B:171-190
20
20
1.10e
ENST00000265729
10e
ENSE00001811340
chr7:
87835819-87834433
1387
SORCN_HUMAN
191-198
8
2
A:191-198
B:191-198
8
8
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1juoa_ (A:)
1b: SCOP_d1juob_ (B:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Penta-EF-hand proteins
(30)
Protein domain
:
Sorcin
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1juoa_
A:
1b
d1juob_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1juoA00 (A:27-198)
1b: CATH_1juoB00 (B:27-198)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1juoA00
A:27-198
1b
1juoB00
B:27-198
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_EF_hand_5_1juoB01 (B:104-163)
1b: PFAM_EF_hand_5_1juoB02 (B:104-163)
2a: PFAM_EF_hand_6_1juoB03 (B:45-102)
2b: PFAM_EF_hand_6_1juoB04 (B:45-102)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
1a
EF_hand_5-1juoB01
B:104-163
1b
EF_hand_5-1juoB02
B:104-163
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
2a
EF_hand_6-1juoB03
B:45-102
2b
EF_hand_6-1juoB04
B:45-102
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