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1JTS
Biol. Unit 1
Info
Asym.Unit (604 KB)
Biol.Unit 1 (299 KB)
Biol.Unit 2 (301 KB)
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(1)
Title
:
DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN
Authors
:
J. Luo, D. Liu, M. A. White, R. O. Fox
Date
:
22 Aug 01 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Dodecamer, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Luo, D. Liu, M. A. White, R. O. Fox
Dna Protection And Binding By E. Coli Dps Protein
To Be Published
[
close entry info
]
Hetero Components
(1, 12)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
1b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
1c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
1d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
1e: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSe)
1f: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSf)
1g: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSg)
1h: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSh)
1i: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSi)
1j: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSj)
1k: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSk)
1l: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSl)
1m: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSm)
1n: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSn)
1o: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSo)
1p: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSp)
1q: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSq)
1r: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSr)
1s: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSs)
1t: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSt)
1u: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSu)
1v: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSv)
1w: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSw)
1x: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
12
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:146 , ASP E:146 , ASP I:146
BINDING SITE FOR RESIDUE TRS A 301
02
AC2
SOFTWARE
GLU G:64 , GLU K:64
BINDING SITE FOR RESIDUE TRS G 302
03
AC3
SOFTWARE
GLU C:167 , GLU G:167 , GLU K:167
BINDING SITE FOR RESIDUE TRS G 303
04
AC4
SOFTWARE
ASP B:146 , ASP H:146 , ASP K:146
BINDING SITE FOR RESIDUE TRS H 304
05
AC5
SOFTWARE
GLU D:64 , HOH D:718 , GLU I:64
BINDING SITE FOR RESIDUE TRS D 305
06
AC6
SOFTWARE
GLU D:167 , GLU F:167 , GLU I:167
BINDING SITE FOR RESIDUE TRS D 306
07
AC7
SOFTWARE
ASP C:146 , ASP F:146 , ASP L:146
BINDING SITE FOR RESIDUE TRS C 307
08
AC8
SOFTWARE
GLU A:64 , GLU H:64 , HOH H:561
BINDING SITE FOR RESIDUE TRS H 308
09
AC9
SOFTWARE
GLU A:167 , GLU H:167 , GLU J:167
BINDING SITE FOR RESIDUE TRS A 309
10
BC1
SOFTWARE
ASP D:146 , ASP G:146 , ASP J:146
BINDING SITE FOR RESIDUE TRS D 310
11
BC2
SOFTWARE
GLU E:64 , GLU L:64
BINDING SITE FOR RESIDUE TRS L 311
12
BC3
SOFTWARE
GLU B:167 , GLU E:167 , GLU L:167
BINDING SITE FOR RESIDUE TRS E 312
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: DPS_1 (A:51-67,B:51-67,C:51-67,D:51-67,E:...)
2: DPS_2 (A:77-91,B:77-91,C:77-91,D:77-91,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPS_1
PS00818
Dps protein family signature 1.
DPS_ECOLI
51-67
12
A:51-67
B:51-67
C:51-67
D:51-67
E:51-67
F:51-67
G:51-67
H:51-67
I:51-67
J:51-67
K:51-67
L:51-67
-
-
-
-
-
-
-
-
-
-
-
-
2
DPS_2
PS00819
Dps protein family signature 2.
DPS_ECOLI
77-91
12
A:77-91
B:77-91
C:77-91
D:77-91
E:77-91
F:77-91
G:77-91
H:77-91
I:77-91
J:77-91
K:77-91
L:77-91
-
-
-
-
-
-
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d1jtsa_ (A:)
1b: SCOP_d1jtsb_ (B:)
1c: SCOP_d1jtsc_ (C:)
1d: SCOP_d1jtsd_ (D:)
1e: SCOP_d1jtse_ (E:)
1f: SCOP_d1jtsf_ (F:)
1g: SCOP_d1jtsg_ (G:)
1h: SCOP_d1jtsh_ (H:)
1i: SCOP_d1jtsi_ (I:)
1j: SCOP_d1jtsj_ (J:)
1k: SCOP_d1jtsk_ (K:)
1l: SCOP_d1jtsl_ (L:)
1m: SCOP_d1jtsm_ (M:)
1n: SCOP_d1jtsn_ (N:)
1o: SCOP_d1jtso_ (O:)
1p: SCOP_d1jtsp_ (P:)
1q: SCOP_d1jtsq_ (Q:)
1r: SCOP_d1jtsr_ (R:)
1s: SCOP_d1jtss_ (S:)
1t: SCOP_d1jtst_ (T:)
1u: SCOP_d1jtsu_ (U:)
1v: SCOP_d1jtsv_ (V:)
1w: SCOP_d1jtsw_ (W:)
1x: SCOP_d1jtsx_ (X:)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Escherichia coli, Dps [TaxId: 562]
(7)
1a
d1jtsa_
A:
1b
d1jtsb_
B:
1c
d1jtsc_
C:
1d
d1jtsd_
D:
1e
d1jtse_
E:
1f
d1jtsf_
F:
1g
d1jtsg_
G:
1h
d1jtsh_
H:
1i
d1jtsi_
I:
1j
d1jtsj_
J:
1k
d1jtsk_
K:
1l
d1jtsl_
L:
1m
d1jtsm_
M:
1n
d1jtsn_
N:
1o
d1jtso_
O:
1p
d1jtsp_
P:
1q
d1jtsq_
Q:
1r
d1jtsr_
R:
1s
d1jtss_
S:
1t
d1jtst_
T:
1u
d1jtsu_
U:
1v
d1jtsv_
V:
1w
d1jtsw_
W:
1x
d1jtsx_
X:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_1jtsJ00 (J:10-167)
1b: CATH_1jtsU00 (U:11-167)
1c: CATH_1jtsE00 (E:12-167)
1d: CATH_1jtsM00 (M:12-167)
1e: CATH_1jtsN00 (N:12-167)
1f: CATH_1jtsO00 (O:12-167)
1g: CATH_1jtsR00 (R:12-167)
1h: CATH_1jtsS00 (S:12-167)
1i: CATH_1jtsT00 (T:12-167)
1j: CATH_1jtsW00 (W:12-167)
1k: CATH_1jtsX00 (X:12-167)
1l: CATH_1jtsA00 (A:13-167)
1m: CATH_1jtsB00 (B:13-167)
1n: CATH_1jtsF00 (F:13-167)
1o: CATH_1jtsG00 (G:13-167)
1p: CATH_1jtsL00 (L:13-167)
1q: CATH_1jtsV00 (V:13-167)
1r: CATH_1jtsC00 (C:14-167)
1s: CATH_1jtsD00 (D:14-167)
1t: CATH_1jtsH00 (H:14-167)
1u: CATH_1jtsI00 (I:14-167)
1v: CATH_1jtsK00 (K:14-167)
1w: CATH_1jtsP00 (P:14-167)
1x: CATH_1jtsQ00 (Q:14-167)
View:
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Classes
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1jtsJ00
J:10-167
1b
1jtsU00
U:11-167
1c
1jtsE00
E:12-167
1d
1jtsM00
M:12-167
1e
1jtsN00
N:12-167
1f
1jtsO00
O:12-167
1g
1jtsR00
R:12-167
1h
1jtsS00
S:12-167
1i
1jtsT00
T:12-167
1j
1jtsW00
W:12-167
1k
1jtsX00
X:12-167
1l
1jtsA00
A:13-167
1m
1jtsB00
B:13-167
1n
1jtsF00
F:13-167
1o
1jtsG00
G:13-167
1p
1jtsL00
L:13-167
1q
1jtsV00
V:13-167
1r
1jtsC00
C:14-167
1s
1jtsD00
D:14-167
1t
1jtsH00
H:14-167
1u
1jtsI00
I:14-167
1v
1jtsK00
K:14-167
1w
1jtsP00
P:14-167
1x
1jtsQ00
Q:14-167
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Chain H
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Chain J
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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