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1JTS
Asym. Unit
Info
Asym.Unit (604 KB)
Biol.Unit 1 (299 KB)
Biol.Unit 2 (301 KB)
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(1)
Title
:
DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN
Authors
:
J. Luo, D. Liu, M. A. White, R. O. Fox
Date
:
22 Aug 01 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Dodecamer, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Luo, D. Liu, M. A. White, R. O. Fox
Dna Protection And Binding By E. Coli Dps Protein
To Be Published
[
close entry info
]
Hetero Components
(1, 24)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
1b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
1c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
1d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
1e: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSe)
1f: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSf)
1g: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSg)
1h: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSh)
1i: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSi)
1j: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSj)
1k: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSk)
1l: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSl)
1m: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSm)
1n: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSn)
1o: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSo)
1p: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSp)
1q: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSq)
1r: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSr)
1s: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSs)
1t: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSt)
1u: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSu)
1v: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSv)
1w: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSw)
1x: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
24
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:146 , ASP E:146 , ASP I:146
BINDING SITE FOR RESIDUE TRS A 301
02
AC2
SOFTWARE
GLU G:64 , GLU K:64
BINDING SITE FOR RESIDUE TRS G 302
03
AC3
SOFTWARE
GLU C:167 , GLU G:167 , GLU K:167
BINDING SITE FOR RESIDUE TRS G 303
04
AC4
SOFTWARE
ASP B:146 , ASP H:146 , ASP K:146
BINDING SITE FOR RESIDUE TRS H 304
05
AC5
SOFTWARE
GLU D:64 , HOH D:718 , GLU I:64
BINDING SITE FOR RESIDUE TRS D 305
06
AC6
SOFTWARE
GLU D:167 , GLU F:167 , GLU I:167
BINDING SITE FOR RESIDUE TRS D 306
07
AC7
SOFTWARE
ASP C:146 , ASP F:146 , ASP L:146
BINDING SITE FOR RESIDUE TRS C 307
08
AC8
SOFTWARE
GLU A:64 , GLU H:64 , HOH H:561
BINDING SITE FOR RESIDUE TRS H 308
09
AC9
SOFTWARE
GLU A:167 , GLU H:167 , GLU J:167
BINDING SITE FOR RESIDUE TRS A 309
10
BC1
SOFTWARE
ASP D:146 , ASP G:146 , ASP J:146
BINDING SITE FOR RESIDUE TRS D 310
11
BC2
SOFTWARE
GLU E:64 , GLU L:64
BINDING SITE FOR RESIDUE TRS L 311
12
BC3
SOFTWARE
GLU B:167 , GLU E:167 , GLU L:167
BINDING SITE FOR RESIDUE TRS E 312
13
BC4
SOFTWARE
ASP M:146 , ASP Q:146 , ASP U:146
BINDING SITE FOR RESIDUE TRS M 313
14
BC5
SOFTWARE
GLU S:64 , GLU W:64
BINDING SITE FOR RESIDUE TRS W 314
15
BC6
SOFTWARE
GLU O:167 , GLU S:167 , GLU W:167
BINDING SITE FOR RESIDUE TRS W 315
16
BC7
SOFTWARE
ASP N:146 , ASP T:146 , ASP W:146
BINDING SITE FOR RESIDUE TRS T 316
17
BC8
SOFTWARE
GLU P:64 , GLU U:64
BINDING SITE FOR RESIDUE TRS P 317
18
BC9
SOFTWARE
GLU P:167 , GLU R:167 , GLU U:167
BINDING SITE FOR RESIDUE TRS P 318
19
CC1
SOFTWARE
ASP O:146 , ASP R:146 , ASP X:146
BINDING SITE FOR RESIDUE TRS R 319
20
CC2
SOFTWARE
GLU M:64 , GLU T:64 , HOH T:715
BINDING SITE FOR RESIDUE TRS T 320
21
CC3
SOFTWARE
GLU M:167 , GLU T:167 , GLU V:167
BINDING SITE FOR RESIDUE TRS M 321
22
CC4
SOFTWARE
ASP P:146 , ASP S:146 , ASP V:146
BINDING SITE FOR RESIDUE TRS P 322
23
CC5
SOFTWARE
HOH N:559 , GLU Q:64 , GLU X:64
BINDING SITE FOR RESIDUE TRS X 323
24
CC6
SOFTWARE
GLU N:167 , GLU Q:167 , GLU X:167
BINDING SITE FOR RESIDUE TRS Q 324
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 48)
Info
All PROSITE Patterns/Profiles
1: DPS_1 (A:51-67,B:51-67,C:51-67,D:51-67,E:...)
2: DPS_2 (A:77-91,B:77-91,C:77-91,D:77-91,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPS_1
PS00818
Dps protein family signature 1.
DPS_ECOLI
51-67
24
A:51-67
B:51-67
C:51-67
D:51-67
E:51-67
F:51-67
G:51-67
H:51-67
I:51-67
J:51-67
K:51-67
L:51-67
M:51-67
N:51-67
O:51-67
P:51-67
Q:51-67
R:51-67
S:51-67
T:51-67
U:51-67
V:51-67
W:51-67
X:51-67
2
DPS_2
PS00819
Dps protein family signature 2.
DPS_ECOLI
77-91
24
A:77-91
B:77-91
C:77-91
D:77-91
E:77-91
F:77-91
G:77-91
H:77-91
I:77-91
J:77-91
K:77-91
L:77-91
M:77-91
N:77-91
O:77-91
P:77-91
Q:77-91
R:77-91
S:77-91
T:77-91
U:77-91
V:77-91
W:77-91
X:77-91
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d1jtsa_ (A:)
1b: SCOP_d1jtsb_ (B:)
1c: SCOP_d1jtsc_ (C:)
1d: SCOP_d1jtsd_ (D:)
1e: SCOP_d1jtse_ (E:)
1f: SCOP_d1jtsf_ (F:)
1g: SCOP_d1jtsg_ (G:)
1h: SCOP_d1jtsh_ (H:)
1i: SCOP_d1jtsi_ (I:)
1j: SCOP_d1jtsj_ (J:)
1k: SCOP_d1jtsk_ (K:)
1l: SCOP_d1jtsl_ (L:)
1m: SCOP_d1jtsm_ (M:)
1n: SCOP_d1jtsn_ (N:)
1o: SCOP_d1jtso_ (O:)
1p: SCOP_d1jtsp_ (P:)
1q: SCOP_d1jtsq_ (Q:)
1r: SCOP_d1jtsr_ (R:)
1s: SCOP_d1jtss_ (S:)
1t: SCOP_d1jtst_ (T:)
1u: SCOP_d1jtsu_ (U:)
1v: SCOP_d1jtsv_ (V:)
1w: SCOP_d1jtsw_ (W:)
1x: SCOP_d1jtsx_ (X:)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Escherichia coli, Dps [TaxId: 562]
(7)
1a
d1jtsa_
A:
1b
d1jtsb_
B:
1c
d1jtsc_
C:
1d
d1jtsd_
D:
1e
d1jtse_
E:
1f
d1jtsf_
F:
1g
d1jtsg_
G:
1h
d1jtsh_
H:
1i
d1jtsi_
I:
1j
d1jtsj_
J:
1k
d1jtsk_
K:
1l
d1jtsl_
L:
1m
d1jtsm_
M:
1n
d1jtsn_
N:
1o
d1jtso_
O:
1p
d1jtsp_
P:
1q
d1jtsq_
Q:
1r
d1jtsr_
R:
1s
d1jtss_
S:
1t
d1jtst_
T:
1u
d1jtsu_
U:
1v
d1jtsv_
V:
1w
d1jtsw_
W:
1x
d1jtsx_
X:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_1jtsJ00 (J:10-167)
1b: CATH_1jtsU00 (U:11-167)
1c: CATH_1jtsE00 (E:12-167)
1d: CATH_1jtsM00 (M:12-167)
1e: CATH_1jtsN00 (N:12-167)
1f: CATH_1jtsO00 (O:12-167)
1g: CATH_1jtsR00 (R:12-167)
1h: CATH_1jtsS00 (S:12-167)
1i: CATH_1jtsT00 (T:12-167)
1j: CATH_1jtsW00 (W:12-167)
1k: CATH_1jtsX00 (X:12-167)
1l: CATH_1jtsA00 (A:13-167)
1m: CATH_1jtsB00 (B:13-167)
1n: CATH_1jtsF00 (F:13-167)
1o: CATH_1jtsG00 (G:13-167)
1p: CATH_1jtsL00 (L:13-167)
1q: CATH_1jtsV00 (V:13-167)
1r: CATH_1jtsC00 (C:14-167)
1s: CATH_1jtsD00 (D:14-167)
1t: CATH_1jtsH00 (H:14-167)
1u: CATH_1jtsI00 (I:14-167)
1v: CATH_1jtsK00 (K:14-167)
1w: CATH_1jtsP00 (P:14-167)
1x: CATH_1jtsQ00 (Q:14-167)
View:
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Classes
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)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1jtsJ00
J:10-167
1b
1jtsU00
U:11-167
1c
1jtsE00
E:12-167
1d
1jtsM00
M:12-167
1e
1jtsN00
N:12-167
1f
1jtsO00
O:12-167
1g
1jtsR00
R:12-167
1h
1jtsS00
S:12-167
1i
1jtsT00
T:12-167
1j
1jtsW00
W:12-167
1k
1jtsX00
X:12-167
1l
1jtsA00
A:13-167
1m
1jtsB00
B:13-167
1n
1jtsF00
F:13-167
1o
1jtsG00
G:13-167
1p
1jtsL00
L:13-167
1q
1jtsV00
V:13-167
1r
1jtsC00
C:14-167
1s
1jtsD00
D:14-167
1t
1jtsH00
H:14-167
1u
1jtsI00
I:14-167
1v
1jtsK00
K:14-167
1w
1jtsP00
P:14-167
1x
1jtsQ00
Q:14-167
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Chain J
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (604 KB)
Header - Asym.Unit
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