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1JTG
Asym. Unit
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Asym.Unit (145 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TEM-1 BETA-LACTAMASE / BETA-LACTAMASE INHIBITOR PROTEIN COMPLEX
Authors
:
N. C. J. Strynadka, S. E. Jensen, P. M. Alzari, M. N. James
Date
:
20 Aug 01 (Deposition) - 17 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Protein-Protein Complex, Tem-1 Beta-Lactamase, Beta- Lactamase Inhibitor Protein, Blip, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Lim, H. U. Park, L. De Castro, S. G. Kang, H. S. Lee, S. Jensen, K. J. Lee, N. C. Strynadka
Crystal Structure And Kinetic Analysis Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase.
Nat. Struct. Biol. V. 8 848 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:133 , ASP B:135 , ARG B:144 , HOH B:750 , HOH B:751 , HOH B:763
BINDING SITE FOR RESIDUE CA B 645
2
AC2
SOFTWARE
ASP D:133 , ASP D:135 , ARG D:144 , HOH D:795 , HOH D:796 , HOH D:797
BINDING SITE FOR RESIDUE CA D 702
[
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SAPs(SNPs)/Variants
(10, 20)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_BLAT_ECOLX_002 (Q39K, chain A/C, )
02: VAR_BLAT_ECOLX_003 (M69L, chain A/C, )
03: VAR_BLAT_ECOLX_004 (E104K, chain A/C, )
04: VAR_BLAT_ECOLX_005 (R164H, chain A/C, )
05: VAR_BLAT_ECOLX_006 (R164S, chain A/C, )
06: VAR_BLAT_ECOLX_007 (A237T, chain A/C, )
07: VAR_BLAT_ECOLX_008 (G238S, chain A/C, )
08: VAR_BLAT_ECOLX_009 (E239K, chain A/C, )
09: VAR_BLAT_ECOLX_010 (T263M, chain A/C, )
10: VAR_BLAT_ECOLX_011 (N274D, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_BLAT_ECOLX_002
*
Q
37
K
BLAT_ECOLX
---
---
A/C
Q
39
K
02
UniProt
VAR_BLAT_ECOLX_003
*
M
67
L
BLAT_ECOLX
---
---
A/C
M
69
L
03
UniProt
VAR_BLAT_ECOLX_004
*
E
102
K
BLAT_ECOLX
---
---
A/C
E
104
K
04
UniProt
VAR_BLAT_ECOLX_005
*
R
162
H
BLAT_ECOLX
---
---
A/C
R
164
H
05
UniProt
VAR_BLAT_ECOLX_006
*
R
162
S
BLAT_ECOLX
---
---
A/C
R
164
S
06
UniProt
VAR_BLAT_ECOLX_007
*
A
235
T
BLAT_ECOLX
---
---
A/C
A
237
T
07
UniProt
VAR_BLAT_ECOLX_008
*
G
236
S
BLAT_ECOLX
---
---
A/C
G
238
S
08
UniProt
VAR_BLAT_ECOLX_009
*
E
237
K
BLAT_ECOLX
---
---
A/C
E
239
K
09
UniProt
VAR_BLAT_ECOLX_010
*
T
261
M
BLAT_ECOLX
---
---
A/C
T
263
M
10
UniProt
VAR_BLAT_ECOLX_011
*
N
272
D
BLAT_ECOLX
---
---
A/C
N
274
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_A (A:66-81,C:66-81)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_A
PS00146
Beta-lactamase class-A active site.
BLAT_ECOLX
64-79
2
A:66-81
C:66-81
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1jtgb_ (B:)
1b: SCOP_d1jtgd_ (D:)
2a: SCOP_d1jtga_ (A:)
2b: SCOP_d1jtgc_ (C:)
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)
(
)
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
BLIP-like
(23)
Superfamily
:
beta-lactamase-inhibitor protein, BLIP
(18)
Family
:
beta-lactamase-inhibitor protein, BLIP
(14)
Protein domain
:
beta-lactamase-inhibitor protein, BLIP
(2)
Streptomyces clavuligerus [TaxId: 1901]
(2)
1a
d1jtgb_
B:
1b
d1jtgd_
D:
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
beta-Lactamase, class A
(131)
Escherichia coli, TEM-1 [TaxId: 562]
(36)
2a
d1jtga_
A:
2b
d1jtgc_
C:
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1jtgB01 (B:75-165)
1b: CATH_1jtgD01 (D:75-165)
1c: CATH_1jtgB02 (B:1-74)
1d: CATH_1jtgD02 (D:1-74)
2a: CATH_1jtgA00 (A:26-288)
2b: CATH_1jtgC00 (C:26-288)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-lactamase Inhibitory Protein; Chain:B, domain 1
(13)
Homologous Superfamily
:
[code=3.30.1450.10, no name defined]
(13)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1jtgB01
B:75-165
1b
1jtgD01
D:75-165
1c
1jtgB02
B:1-74
1d
1jtgD02
D:1-74
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Escherichia coli. Organism_taxid: 562.
(25)
2a
1jtgA00
A:26-288
2b
1jtgC00
C:26-288
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Beta_lactamase2_1jtgC01 (C:51-261)
1b: PFAM_Beta_lactamase2_1jtgC02 (C:51-261)
2a: PFAM_BLIP_1jtgD01 (D:1-164)
2b: PFAM_BLIP_1jtgD02 (D:1-164)
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Clans
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)
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)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Beta-lactamase
(210)
Family
:
Beta-lactamase2
(75)
Escherichia coli
(42)
1a
Beta-lactamase2-1jtgC01
C:51-261
1b
Beta-lactamase2-1jtgC02
C:51-261
Clan
:
PepSY
(8)
Family
:
BLIP
(4)
Streptomyces clavuligerus
(4)
2a
BLIP-1jtgD01
D:1-164
2b
BLIP-1jtgD02
D:1-164
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Asym.Unit (145 KB)
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