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1JSO
Biol. Unit 2
Info
Asym.Unit (91 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (251 KB)
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(1)
Title
:
STRUCTURE OF AVIAN H5 HAEMAGGLUTININ BOUND TO LSTC RECEPTOR ANALOG
Authors
:
Y. Ha, D. J. Stevens, J. J. Skehel, D. C. Wiley
Date
:
17 Aug 01 (Deposition) - 26 Sep 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (3x)
Keywords
:
Influenza, Receptor Complex, Fusion Protein, Viral Protein
(Keyword Search:
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Reference
:
Y. Ha, D. J. Stevens, J. J. Skehel, D. C. Wiley
X-Ray Structures Of H5 Avian And H9 Swine Influenza Virus Hemagglutinins Bound To Avian And Human Receptor Analogs.
Proc. Natl. Acad. Sci. Usa V. 98 11181 2001
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2a: O-SIALIC ACID (SIAa)
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No.
Name
Count
Type
Full Name
1
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SIA
3
Ligand/Ion
O-SIALIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:11
BINDING SITE FOR RESIDUE NAG A 326
2
AC2
SOFTWARE
GLN A:15 , ASN A:23
BINDING SITE FOR RESIDUE NAG A 327
3
AC3
SOFTWARE
ASN A:165 , ASN A:236 , ALA A:238 , NAG A:329 , HOH A:611
BINDING SITE FOR RESIDUE NAG A 328
4
AC4
SOFTWARE
ASN A:236 , NAG A:328
BINDING SITE FOR RESIDUE NAG A 329
5
AC5
SOFTWARE
ASN A:275 , ASN A:286
BINDING SITE FOR RESIDUE NAG A 331
6
AC6
SOFTWARE
GLU B:150 , ASN B:154 , NAG B:178
BINDING SITE FOR RESIDUE NAG B 177
7
AC7
SOFTWARE
NAG B:177
BINDING SITE FOR RESIDUE NAG B 178
8
AC8
SOFTWARE
TYR A:91 , VAL A:131 , SER A:132 , SER A:133 , TRP A:149 , ILE A:151 , HIS A:179 , GLU A:186 , LEU A:190 , GLN A:222 , HOH A:493
BINDING SITE FOR RESIDUE SIA A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1jsoa_ (A:)
2a: SCOP_d1jsob_ (B:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1jsoa_
A:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1jsob_
B:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1jsoA01 (A:48-269)
2a: CATH_1jsoB00 (B:1-160)
3a: CATH_1jsoA02 (A:1-47,A:270-321)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus. Organism_taxid: 11320. Strain: a/duck/singapore/3/97.
(3)
1a
1jsoA01
A:48-269
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus. Organism_taxid: 11320. Strain: a/duck/singapore/3/97.
(3)
2a
1jsoB00
B:1-160
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus. Organism_taxid: 11320. Strain: a/duck/singapore/3/97.
(3)
3a
1jsoA02
A:1-47,A:270-321
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1jsoB01 (B:1-160)
1b: PFAM_Hemagglutinin_1jsoB02 (B:1-160)
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Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Duck/Singapore/3/1997 H5N3) (Influenza A virus (strain A/Duck/Malaysia/F
(3)
1a
Hemagglutinin-1jsoB01
B:1-160
1b
Hemagglutinin-1jsoB02
B:1-160
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Asym.Unit (91 KB)
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Header - Biol.Unit 2
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