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1JSH
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (244 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H9 HAEMAGGLUTININ COMPLEXED WITH LSTA RECEPTOR ANALOG
Authors
:
Y. Ha, D. J. Stevens, J. J. Skehel, D. C. Wiley
Date
:
17 Aug 01 (Deposition) - 26 Sep 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (3x)
Keywords
:
Influenza, Fusion Protein, Receptor Complex, Viral Protein
(Keyword Search:
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Reference
:
Y. Ha, D. J. Stevens, J. J. Skehel, D. C. Wiley
X-Ray Structures Of H5 Avian And H9 Swine Influenza Virus Hemagglutinins Bound To Avian And Human Receptor Analogs.
Proc. Natl. Acad. Sci. Usa V. 98 11181 2001
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3a: O-SIALIC ACID (SIAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
1
Ligand/Ion
O-SIALIC ACID
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:11 , GLN A:115
BINDING SITE FOR RESIDUE NAG A 320
02
AC2
SOFTWARE
ILE A:121 , ASN A:123 , GLN A:154 , ASP A:155 , ALA A:156 , NAG A:322
BINDING SITE FOR RESIDUE NAG A 321
03
AC3
SOFTWARE
NAG A:321
BINDING SITE FOR RESIDUE NAG A 322
04
AC4
SOFTWARE
VAL A:269 , ASN A:280 , NAG A:324 , NAG A:325
BINDING SITE FOR RESIDUE NAG A 323
05
AC5
SOFTWARE
NAG A:323 , NAG A:325
BINDING SITE FOR RESIDUE NAG A 324
06
AC6
SOFTWARE
ASN A:45 , NAG A:323 , NAG A:324
BINDING SITE FOR RESIDUE NAG A 325
07
AC7
SOFTWARE
THR A:35 , ARG A:276 , ASN A:287 , LYS A:303 , NAG A:327
BINDING SITE FOR RESIDUE NAG A 326
08
AC8
SOFTWARE
LYS A:303 , NAG A:326
BINDING SITE FOR RESIDUE NAG A 327
09
AC9
SOFTWARE
GLN B:147 , GLU B:150 , ASN B:154 , THR B:156 , NAG B:178 , HOH B:243
BINDING SITE FOR RESIDUE NAG B 177
10
BC1
SOFTWARE
NAG B:177
BINDING SITE FOR RESIDUE NAG B 178
11
BC2
SOFTWARE
TYR A:91 , GLY A:128 , THR A:129 , SER A:130 , SER A:131 , TRP A:143 , PRO A:176 , LEU A:184 , LEU A:216 , GAL A:329 , HOH A:364
BINDING SITE FOR RESIDUE SIA A 328
12
BC3
SOFTWARE
GLY A:215 , LEU A:216 , SIA A:328
BINDING SITE FOR RESIDUE GAL A 329
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1jsha_ (A:)
2a: SCOP_d1jshb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1jsha_
A:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1jshb_
B:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1jshA01 (A:48-263)
2a: CATH_1jshB00 (B:1-160)
3a: CATH_1jshA02 (A:1-47,A:264-317)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/swine/hong kong/9/98(h9n2)). Organism_taxid: 145307. Strain: a/swine/hong kong/9/98.
(3)
1a
1jshA01
A:48-263
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/swine/hong kong/9/98(h9n2)). Organism_taxid: 145307. Strain: a/swine/hong kong/9/98.
(3)
2a
1jshB00
B:1-160
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus (a/swine/hong kong/9/98(h9n2)). Organism_taxid: 145307. Strain: a/swine/hong kong/9/98.
(3)
3a
1jshA02
A:1-47,A:264-317
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1jshB01 (B:1-160)
1b: PFAM_Hemagglutinin_1jshB02 (B:1-160)
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)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (A/swine/Hong Kong/9/98(H9N2))
(3)
1a
Hemagglutinin-1jshB01
B:1-160
1b
Hemagglutinin-1jshB02
B:1-160
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
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