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Biol. Unit 1
Info
Asym.Unit (141 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
STRUCTURE OF A FUNCTIONAL UNIT FROM OCTOPUS HEMOCYANIN
Authors
:
M. E. Cuff, K. I. Miller, K. E. Van Holde, W. A. Hendrickson
Date
:
16 Aug 01 (Deposition) - 03 Oct 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoprotein, Mollusc, Oxygen-Transport, Thioether Bond, Oxygen Storage-Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Cuff, K. I. Miller, K. E. Van Holde, W. A. Hendrickson
Crystal Structure Of A Functional Unit From Octopus Hemocyanin.
J. Mol. Biol. V. 278 855 1998
[
close entry info
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: CU2-O2 CLUSTER (CUOa)
2b: CU2-O2 CLUSTER (CUOb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CUO
1
Ligand/Ion
CU2-O2 CLUSTER
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC3 (SOFTWARE)
11: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:538 , NAG A:891 , ASN A:2553 , THR A:2555 , HIS A:2763
BINDING SITE FOR RESIDUE NDG A 890
02
AC2
SOFTWARE
HOH A:416 , HOH A:598 , HOH A:638 , NDG A:890 , BMA A:892 , TYR A:2551
BINDING SITE FOR RESIDUE NAG A 891
03
AC3
SOFTWARE
NAG A:891 , MAN A:893 , BMA A:896
BINDING SITE FOR RESIDUE BMA A 892
04
AC4
SOFTWARE
HOH A:564 , BMA A:892 , MAN A:894 , MAN A:895 , ILE A:2804 , GLY A:2805 , TYR A:2881
BINDING SITE FOR RESIDUE MAN A 893
05
AC5
SOFTWARE
MAN A:893 , ARG A:2802 , THR A:2803 , PHE A:2837
BINDING SITE FOR RESIDUE MAN A 894
06
AC6
SOFTWARE
HOH A:570 , MAN A:893 , GLU A:2833
BINDING SITE FOR RESIDUE MAN A 895
07
AC7
SOFTWARE
BMA A:892
BINDING SITE FOR RESIDUE BMA A 896
08
AC9
SOFTWARE
MAN A:992 , NAG B:990
BINDING SITE FOR RESIDUE NAG B 991
09
BC1
SOFTWARE
LYS A:2880 , HOH B:695 , NAG B:991 , MAN B:994 , PHE B:2837
BINDING SITE FOR RESIDUE MAN A 992
10
BC3
SOFTWARE
MAN A:992 , MAN B:993 , ARG B:2802 , THR B:2803 , PHE B:2837
BINDING SITE FOR RESIDUE MAN B 994
11
BC5
SOFTWARE
HIS A:2543 , HIS A:2562 , PHE A:2567 , HIS A:2571 , HIS A:2671 , HIS A:2675 , HIS A:2702 , LEU A:2830
BINDING SITE FOR RESIDUE CUO A 888
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: TYROSINASE_1 (A:2562-2579)
2: TYROSINASE_2 (A:2695-2706)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYROSINASE_1
PS00497
Tyrosinase CuA-binding region signature.
HCYG_ENTDO
60-77
480-497
894-912
1312-1329
1728-1745
2144-2161
2562-2579
1
-
-
-
-
-
-
A:2562-2579
-
2
TYROSINASE_2
PS00498
Tyrosinase and hemocyanins CuB-binding region signature.
HCYG_ENTDO
625-636
1037-1048
1449-1460
1873-1884
2286-2297
2695-2706
1
-
-
-
-
-
A:2695-2706
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1js8a1 (A:2503-2791)
1b: SCOP_d1js8b1 (B:2503-2791)
2a: SCOP_d1js8a2 (A:2792-2892)
2b: SCOP_d1js8b2 (B:2792-2892)
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Classes
(
)
(
)
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(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Di-copper centre-containing domain
(47)
Superfamily
:
Di-copper centre-containing domain
(47)
Family
:
Hemocyanin middle domain
(8)
Protein domain
:
Mollusc hemocyanin
(2)
Giant octopus (Octopus dofleini) [TaxId: 267067]
(1)
1a
d1js8a1
A:2503-2791
1b
d1js8b1
B:2503-2791
Class
:
All beta proteins
(24004)
Fold
:
C-terminal domain of mollusc hemocyanin
(2)
Superfamily
:
C-terminal domain of mollusc hemocyanin
(2)
Family
:
C-terminal domain of mollusc hemocyanin
(2)
Protein domain
:
C-terminal domain of mollusc hemocyanin
(2)
Giant octopus (Octopus dofleini) [TaxId: 267067]
(1)
2a
d1js8a2
A:2792-2892
2b
d1js8b2
B:2792-2892
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1js8A01 (A:2503-2786)
1b: CATH_1js8B01 (B:2503-2786)
2a: CATH_1js8B02 (B:2787-2891)
2b: CATH_1js8A02 (A:2787-2892)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
di-copper center containing domain from catechol oxidase
(13)
Homologous Superfamily
:
Di-copper center containing domain from catechol oxidase
(13)
Octopus dofleini. Organism_taxid: 6644. Strain: g-type sequence
(1)
1a
1js8A01
A:2503-2786
1b
1js8B01
B:2503-2786
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Hemocyanin; Chain: A, domain 2
(2)
Homologous Superfamily
:
[code=2.60.310.10, no name defined]
(2)
Octopus dofleini. Organism_taxid: 6644. Strain: g-type sequence
(1)
2a
1js8B02
B:2787-2891
2b
1js8A02
A:2787-2892
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Tyrosinase_1js8B01 (B:2533-2715)
1b: PFAM_Tyrosinase_1js8B02 (B:2533-2715)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Di-copper
(13)
Family
:
Tyrosinase
(10)
Enteroctopus dofleini (Giant octopus) (Octopus dofleini)
(1)
1a
Tyrosinase-1js8B01
B:2533-2715
1b
Tyrosinase-1js8B02
B:2533-2715
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]
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
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