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1JS6
Asym. Unit
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Asym.Unit (156 KB)
Biol.Unit 1 (151 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DOPA DECARBOXYLASE
Authors
:
P. Burkhard, P. Dominici, C. Borri-Voltattorni, J. N. Jansonius, V. N. Malashkevich
Date
:
16 Aug 01 (Deposition) - 26 Oct 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dopa Decarboxylase, Carbidopa, Parkinson'S Disease, Vitamin B6, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Burkhard, P. Dominici, C. Borri-Voltattorni, J. N. Jansonius, V. N. Malashkevich
Structural Insight Into Parkinson'S Disease Treatment From Drug-Inhibited Dopa Decarboxylase.
Nat. Struct. Biol. V. 8 963 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
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Label:
No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:80 , SER A:147 , ALA A:148 , SER A:149 , HIS A:192 , THR A:246 , ASP A:271 , ALA A:273 , ASN A:300 , HIS A:302 , LYS A:303 , HOH A:609 , HOH B:604
BINDING SITE FOR RESIDUE PLP A 601
2
AC2
SOFTWARE
PHE B:80 , SER B:147 , ALA B:148 , SER B:149 , HIS B:192 , THR B:246 , ASP B:271 , ALA B:273 , ASN B:300 , HIS B:302 , LYS B:303 , HOH B:620 , HOH B:624
BINDING SITE FOR RESIDUE PLP B 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DDC_GAD_HDC_YDC (A:296-317,B:296-317)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DDC_GAD_HDC_YDC
PS00392
DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site.
DDC_PIG
296-317
2
A:296-317
B:296-317
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1js6a_ (A:)
1b: SCOP_d1js6b_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Pyridoxal-dependent decarboxylase
(14)
Protein domain
:
DOPA decarboxylase
(2)
Pig (Sus scrofa) [TaxId: 9823]
(2)
1a
d1js6a_
A:
1b
d1js6b_
B:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1js6A02 (A:82-379)
1b: CATH_1js6B02 (B:82-379)
2a: CATH_1js6A03 (A:380-476)
2b: CATH_1js6B03 (B:380-476)
3a: CATH_1js6A01 (A:1-81)
3b: CATH_1js6B01 (B:1-81)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Pig (Sus scrofa)
(7)
1a
1js6A02
A:82-379
1b
1js6B02
B:82-379
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Pig (Sus scrofa)
(7)
2a
1js6A03
A:380-476
2b
1js6B03
B:380-476
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
dopa decarboxylase, N-terminal domain
(3)
Homologous Superfamily
:
dopa decarboxylase, N-terminal domain
(3)
Pig (Sus scrofa)
(2)
3a
1js6A01
A:1-81
3b
1js6B01
B:1-81
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pyridoxal_deC_1js6B01 (B:35-414)
1b: PFAM_Pyridoxal_deC_1js6B02 (B:35-414)
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Clan
:
PLP_aminotran
(240)
Family
:
Pyridoxal_deC
(14)
Sus scrofa (Pig)
(1)
1a
Pyridoxal_deC-1js6B01
B:35-414
1b
Pyridoxal_deC-1js6B02
B:35-414
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Asymmetric Unit 1
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