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1JRP
Asym. Unit
Info
Asym.Unit (749 KB)
Biol.Unit 1 (374 KB)
Biol.Unit 2 (376 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF XANTHINE DEHYDROGENASE INHIBITED BY ALLOXANTHINE FROM RHODOBACTER CAPSULATUS
Authors
:
J. J. Truglio, K. Theis, S. Leimkuhler, R. Rappa, K. V. Rajagopalan, C. K
Date
:
14 Aug 01 (Deposition) - 11 Jan 02 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Partial Beta-Barrel; Xdh; Xo, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Truglio, K. Theis, S. Leimkuhler, R. Rappa, K. V. Rajagopalan, C. Kisker
Crystal Structures Of The Active And Alloxanthine-Inhibited Forms Of Xanthine Dehydrogenase From Rhodobacter Capsulatus
Structure V. 10 115 2002
[
close entry info
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Hetero Components
(6, 28)
Info
All Hetero Components
1a: OXYPURINOL (141a)
1b: OXYPURINOL (141b)
1c: OXYPURINOL (141c)
1d: OXYPURINOL (141d)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
3c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
3d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
4a: FE2/S2 (INORGANIC) CLUSTER (FESa)
4b: FE2/S2 (INORGANIC) CLUSTER (FESb)
4c: FE2/S2 (INORGANIC) CLUSTER (FESc)
4d: FE2/S2 (INORGANIC) CLUSTER (FESd)
4e: FE2/S2 (INORGANIC) CLUSTER (FESe)
4f: FE2/S2 (INORGANIC) CLUSTER (FESf)
4g: FE2/S2 (INORGANIC) CLUSTER (FESg)
4h: FE2/S2 (INORGANIC) CLUSTER (FESh)
5a: DIOXOTHIOMOLYBDENUM(VI) ION (MOSa)
5b: DIOXOTHIOMOLYBDENUM(VI) ION (MOSb)
5c: DIOXOTHIOMOLYBDENUM(VI) ION (MOSc)
5d: DIOXOTHIOMOLYBDENUM(VI) ION (MOSd)
6a: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEa)
6b: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEb)
6c: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEc)
6d: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-D... (MTEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
141
4
Ligand/Ion
OXYPURINOL
2
CA
4
Ligand/Ion
CALCIUM ION
3
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
FES
8
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
5
MOS
4
Ligand/Ion
DIOXOTHIOMOLYBDENUM(VI) ION
6
MTE
4
Ligand/Ion
PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:172 , HIS B:173 , TYR B:175 , THR B:266 , GLY B:267
BINDING SITE FOR RESIDUE CA B 3006
02
AC2
SOFTWARE
GLU D:172 , HIS D:173 , TYR D:175 , THR D:266 , GLY D:267
BINDING SITE FOR RESIDUE CA D 3006
03
AC3
SOFTWARE
GLU F:172 , HIS F:173 , TYR F:175 , THR F:266 , GLY F:267
BINDING SITE FOR RESIDUE CA F 3006
04
AC4
SOFTWARE
GLU H:172 , HIS H:173 , TYR H:175 , THR H:266 , GLY H:267
BINDING SITE FOR RESIDUE CA H 3006
05
AC5
SOFTWARE
GLN A:102 , CYS A:103 , GLY A:104 , CYS A:106 , CYS A:134 , ARG A:135 , CYS A:136
BINDING SITE FOR RESIDUE FES A 3001
06
AC6
SOFTWARE
GLY A:38 , CYS A:39 , ASN A:40 , GLY A:42 , CYS A:44 , GLY A:45 , CYS A:47 , CYS A:63
BINDING SITE FOR RESIDUE FES A 3002
07
AC7
SOFTWARE
GLN A:102 , CYS A:136 , GLY B:226 , GLY B:227 , PHE B:228 , GLY B:229 , ARG B:342 , MET B:488 , GLY B:489 , GLN B:490 , LEU B:492 , THR B:527 , ALA B:528 , ALA B:529 , SER B:530 , SER B:531 , GLY B:532 , ALA B:533 , GLN B:663 , GLU B:730 , MOS B:3004 , 141 B:4000
BINDING SITE FOR RESIDUE MTE B 3003
08
AC8
SOFTWARE
GLN B:197 , GLY B:229 , PHE B:341 , ARG B:342 , ALA B:528 , GLU B:730 , MTE B:3003 , 141 B:4000
BINDING SITE FOR RESIDUE MOS B 3004
09
AC9
SOFTWARE
GLY A:42 , ASP A:43 , LEU A:201 , ALA A:203 , GLY A:204 , GLY A:205 , THR A:206 , ASP A:207 , VAL A:208 , PHE A:270 , ALA A:271 , THR A:280 , GLY A:283 , ASN A:284 , ALA A:286 , ASN A:287 , GLY A:292 , ASP A:293 , ARG A:330 , VAL A:336 , LYS A:352 , GLN A:359
BINDING SITE FOR RESIDUE FAD A 3005
10
BC1
SOFTWARE
GLU B:232 , ARG B:310 , PHE B:344 , THR B:460 , ALA B:528 , ALA B:529 , GLU B:730 , MTE B:3003 , MOS B:3004
BINDING SITE FOR RESIDUE 141 B 4000
11
BC2
SOFTWARE
GLN C:102 , CYS C:103 , GLY C:104 , CYS C:106 , CYS C:134 , ARG C:135 , CYS C:136
BINDING SITE FOR RESIDUE FES C 3001
12
BC3
SOFTWARE
GLY C:38 , CYS C:39 , ASN C:40 , GLY C:42 , CYS C:44 , GLY C:45 , CYS C:47 , CYS C:63
BINDING SITE FOR RESIDUE FES C 3002
13
BC4
SOFTWARE
GLN C:102 , CYS C:136 , GLY D:226 , GLY D:227 , PHE D:228 , GLY D:229 , ARG D:342 , MET D:488 , GLY D:489 , GLN D:490 , THR D:527 , ALA D:528 , ALA D:529 , SER D:530 , SER D:531 , GLY D:532 , ALA D:533 , GLN D:663 , GLU D:730 , MOS D:3004 , 141 D:4000
BINDING SITE FOR RESIDUE MTE D 3003
14
BC5
SOFTWARE
GLN D:197 , GLY D:229 , GLU D:232 , PHE D:341 , ARG D:342 , ALA D:528 , GLU D:730 , MTE D:3003 , 141 D:4000
BINDING SITE FOR RESIDUE MOS D 3004
15
BC6
SOFTWARE
GLU C:41 , GLY C:42 , LEU C:64 , LEU C:201 , ALA C:203 , GLY C:204 , GLY C:205 , THR C:206 , ASP C:207 , VAL C:208 , ALA C:245 , PHE C:270 , ALA C:271 , ALA C:279 , THR C:280 , GLY C:283 , ASN C:284 , ALA C:286 , GLY C:292 , ASP C:293 , ARG C:330 , PHE C:335 , VAL C:336 , LYS C:352 , GLN C:359
BINDING SITE FOR RESIDUE FAD C 3005
16
BC7
SOFTWARE
GLU D:232 , ARG D:310 , PHE D:344 , PHE D:459 , THR D:460 , ALA D:528 , ALA D:529 , GLU D:730 , MTE D:3003 , MOS D:3004
BINDING SITE FOR RESIDUE 141 D 4000
17
BC8
SOFTWARE
GLN E:102 , CYS E:103 , GLY E:104 , CYS E:106 , CYS E:134 , ARG E:135 , CYS E:136 , LEU F:176
BINDING SITE FOR RESIDUE FES E 3001
18
BC9
SOFTWARE
GLY E:38 , CYS E:39 , ASN E:40 , GLY E:42 , ASP E:43 , CYS E:44 , GLY E:45 , CYS E:47 , CYS E:63
BINDING SITE FOR RESIDUE FES E 3002
19
CC1
SOFTWARE
GLN E:102 , CYS E:136 , GLY F:226 , GLY F:227 , PHE F:228 , GLY F:229 , ARG F:342 , MET F:488 , GLY F:489 , GLN F:490 , THR F:527 , ALA F:528 , ALA F:529 , SER F:530 , SER F:531 , GLY F:532 , ALA F:533 , GLN F:663 , GLU F:730 , MOS F:3004 , 141 F:4000
BINDING SITE FOR RESIDUE MTE F 3003
20
CC2
SOFTWARE
GLN F:197 , GLY F:229 , PHE F:341 , ARG F:342 , ALA F:528 , GLU F:730 , MTE F:3003 , 141 F:4000
BINDING SITE FOR RESIDUE MOS F 3004
21
CC3
SOFTWARE
GLY E:42 , LEU E:201 , ALA E:203 , GLY E:204 , GLY E:205 , THR E:206 , ASP E:207 , VAL E:208 , LEU E:225 , PHE E:270 , ALA E:271 , THR E:280 , GLY E:283 , ASN E:284 , ALA E:286 , ASN E:287 , GLY E:292 , ASP E:293 , ARG E:330 , VAL E:336 , LYS E:352
BINDING SITE FOR RESIDUE FAD E 3005
22
CC4
SOFTWARE
GLU F:232 , ARG F:310 , PHE F:344 , PHE F:459 , ALA F:528 , ALA F:529 , GLU F:730 , MTE F:3003 , MOS F:3004
BINDING SITE FOR RESIDUE 141 F 4000
23
CC5
SOFTWARE
GLN G:102 , CYS G:103 , GLY G:104 , CYS G:106 , CYS G:134 , ARG G:135 , CYS G:136
BINDING SITE FOR RESIDUE FES G 3001
24
CC6
SOFTWARE
GLY G:38 , CYS G:39 , ASN G:40 , GLY G:42 , ASP G:43 , CYS G:44 , GLY G:45 , CYS G:47 , CYS G:63
BINDING SITE FOR RESIDUE FES G 3002
25
CC7
SOFTWARE
GLN G:102 , GLY H:226 , GLY H:227 , PHE H:228 , GLY H:229 , ARG H:342 , MET H:488 , GLY H:489 , GLN H:490 , THR H:527 , ALA H:528 , ALA H:529 , SER H:530 , SER H:531 , GLY H:532 , ALA H:533 , GLN H:663 , GLU H:730 , MOS H:3004 , 141 H:4000
BINDING SITE FOR RESIDUE MTE H 3003
26
CC8
SOFTWARE
GLN H:197 , PHE H:228 , GLY H:229 , PHE H:341 , ARG H:342 , ALA H:528 , GLU H:730 , MTE H:3003 , 141 H:4000
BINDING SITE FOR RESIDUE MOS H 3004
27
CC9
SOFTWARE
GLY G:42 , LEU G:201 , ILE G:202 , ALA G:203 , GLY G:204 , GLY G:205 , THR G:206 , ASP G:207 , VAL G:208 , PHE G:270 , ALA G:271 , VAL G:275 , ALA G:279 , THR G:280 , ASN G:284 , ALA G:286 , ASN G:287 , GLY G:292 , ASP G:293 , ARG G:330 , VAL G:336 , LYS G:352 , GLN G:359
BINDING SITE FOR RESIDUE FAD G 3005
28
DC1
SOFTWARE
GLU H:232 , ARG H:310 , PHE H:344 , THR H:460 , ALA H:528 , ALA H:529 , GLU H:730 , MTE H:3003 , MOS H:3004
BINDING SITE FOR RESIDUE 141 H 4000
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 24)
Info
All SCOP Domains
1a: SCOP_d1jrpa1 (A:85-166)
1b: SCOP_d1jrpc1 (C:85-166)
1c: SCOP_d1jrpe1 (E:85-166)
1d: SCOP_d1jrpg1 (G:85-166)
2a: SCOP_d1jrpb1 (B:2-123)
2b: SCOP_d1jrpd1 (D:2-123)
2c: SCOP_d1jrpf1 (F:2-123)
2d: SCOP_d1jrph1 (H:2-123)
3a: SCOP_d1jrpa2 (A:1-84)
3b: SCOP_d1jrpc2 (C:1-84)
3c: SCOP_d1jrpe2 (E:1-84)
3d: SCOP_d1jrpg2 (G:1-84)
4a: SCOP_d1jrpa3 (A:346-462)
4b: SCOP_d1jrpc3 (C:346-462)
4c: SCOP_d1jrpe3 (E:346-462)
4d: SCOP_d1jrpg3 (G:346-462)
5a: SCOP_d1jrpa4 (A:179-345)
5b: SCOP_d1jrpc4 (C:179-345)
5c: SCOP_d1jrpe4 (E:179-345)
5d: SCOP_d1jrpg4 (G:179-345)
6a: SCOP_d1jrpb2 (B:124-777)
6b: SCOP_d1jrpd2 (D:124-777)
6c: SCOP_d1jrpf2 (F:124-777)
6d: SCOP_d1jrph2 (H:124-777)
View:
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Classes
(
)
(
)
Folds
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Superfamilies
(
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
CO dehydrogenase ISP C-domain like
(45)
Superfamily
:
CO dehydrogenase ISP C-domain like
(45)
Family
:
CO dehydrogenase ISP C-domain like
(42)
Protein domain
:
Xanthine dehydrogenase chain A, domain 2
(2)
Rhodobacter capsulatus [TaxId: 1061]
(2)
1a
d1jrpa1
A:85-166
1b
d1jrpc1
C:85-166
1c
d1jrpe1
E:85-166
1d
d1jrpg1
G:85-166
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
CO dehydrogenase molybdoprotein N-domain-like
(44)
Family
:
CO dehydrogenase molybdoprotein N-domain-like
(34)
Protein domain
:
Xanthine dehydrogenase chain B, N-terminal domain
(4)
Rhodobacter capsulatus [TaxId: 1061]
(4)
2a
d1jrpb1
B:2-123
2b
d1jrpd1
D:2-123
2c
d1jrpf1
F:2-123
2d
d1jrph1
H:2-123
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
Xanthine dehydrogenase chain A, N-terminal domain
(2)
Rhodobacter capsulatus [TaxId: 1061]
(2)
3a
d1jrpa2
A:1-84
3b
d1jrpc2
C:1-84
3c
d1jrpe2
E:1-84
3d
d1jrpg2
G:1-84
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
CO dehydrogenase flavoprotein C-terminal domain-like
(35)
Family
:
CO dehydrogenase flavoprotein C-terminal domain-like
(23)
Protein domain
:
Xanthine dehydrogenase chain A, domain 4
(2)
Rhodobacter capsulatus [TaxId: 1061]
(2)
4a
d1jrpa3
A:346-462
4b
d1jrpc3
C:346-462
4c
d1jrpe3
E:346-462
4d
d1jrpg3
G:346-462
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
CO dehydrogenase flavoprotein N-terminal domain-like
(33)
Protein domain
:
Xanthine dehydrogenase chain A, domain 3
(2)
Rhodobacter capsulatus [TaxId: 1061]
(2)
5a
d1jrpa4
A:179-345
5b
d1jrpc4
C:179-345
5c
d1jrpe4
E:179-345
5d
d1jrpg4
G:179-345
Fold
:
Molybdenum cofactor-binding domain
(44)
Superfamily
:
Molybdenum cofactor-binding domain
(44)
Family
:
Molybdenum cofactor-binding domain
(44)
Protein domain
:
Xanthine dehydrogenase chain B, C-terminal domain
(4)
Rhodobacter capsulatus [TaxId: 1061]
(4)
6a
d1jrpb2
B:124-777
6b
d1jrpd2
D:124-777
6c
d1jrpf2
F:124-777
6d
d1jrph2
H:124-777
[
close SCOP info
]
CATH Domains
(7, 38)
Info
all CATH domains
1a: CATH_1jrpB04 (B:138-172,B:267-408)
1b: CATH_1jrpB02 (B:461-619)
1c: CATH_1jrpD02 (D:461-619)
1d: CATH_1jrpF02 (F:461-619)
1e: CATH_1jrpH02 (H:461-619)
1f: CATH_1jrpB03 (B:411-460,B:620-776)
1g: CATH_1jrpD03 (D:411-460,D:620-776)
1h: CATH_1jrpF03 (F:411-460,F:620-776)
1i: CATH_1jrpH03 (H:411-460,H:620-776)
1j: CATH_1jrpB05 (B:173-266)
1k: CATH_1jrpD05 (D:173-266)
1l: CATH_1jrpF05 (F:173-266)
1m: CATH_1jrpH05 (H:173-266)
1n: CATH_1jrpD04 (D:138-172,D:267-408)
1o: CATH_1jrpF04 (F:138-172,F:267-408)
1p: CATH_1jrpH04 (H:138-172,H:267-408)
2a: CATH_1jrpC05 (C:349-452)
2b: CATH_1jrpE05 (E:349-452)
2c: CATH_1jrpG05 (G:349-452)
2d: CATH_1jrpA04 (A:346-462)
3a: CATH_1jrpC03 (C:181-230)
3b: CATH_1jrpE03 (E:181-230)
3c: CATH_1jrpG03 (G:181-230)
4a: CATH_1jrpC04 (C:231-344)
4b: CATH_1jrpE04 (E:231-344)
4c: CATH_1jrpG04 (G:231-344)
5a: CATH_1jrpB01 (B:2-124)
5b: CATH_1jrpD01 (D:2-124)
5c: CATH_1jrpF01 (F:2-124)
5d: CATH_1jrpH01 (H:2-124)
6a: CATH_1jrpA01 (A:1-84)
6b: CATH_1jrpC01 (C:1-80)
6c: CATH_1jrpE01 (E:1-80)
6d: CATH_1jrpG01 (G:1-80)
7a: CATH_1jrpC02 (C:81-166)
7b: CATH_1jrpE02 (E:81-166)
7c: CATH_1jrpG02 (G:81-166)
7d: CATH_1jrpA02 (A:85-166)
View:
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Classes
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)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Aldehyde Oxidoreductase; domain 4
(20)
Homologous Superfamily
:
Aldehyde Oxidoreductase; domain 4
(20)
Rhodobacter capsulatus. Organism_taxid: 1061.
(2)
1a
1jrpB04
B:138-172,B:267-408
1b
1jrpB02
B:461-619
1c
1jrpD02
D:461-619
1d
1jrpF02
F:461-619
1e
1jrpH02
H:461-619
1f
1jrpB03
B:411-460,B:620-776
1g
1jrpD03
D:411-460,D:620-776
1h
1jrpF03
F:411-460,F:620-776
1i
1jrpH03
H:411-460,H:620-776
1j
1jrpB05
B:173-266
1k
1jrpD05
D:173-266
1l
1jrpF05
F:173-266
1m
1jrpH05
H:173-266
1n
1jrpD04
D:138-172,D:267-408
1o
1jrpF04
F:138-172,F:267-408
1p
1jrpH04
H:138-172,H:267-408
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.50, no name defined]
(22)
Rhodobacter capsulatus. Organism_taxid: 1061.
(6)
2a
1jrpC05
C:349-452
2b
1jrpE05
E:349-452
2c
1jrpG05
G:349-452
2d
1jrpA04
A:346-462
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2
(50)
Homologous Superfamily
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
(50)
Rhodobacter capsulatus. Organism_taxid: 1061.
(6)
3a
1jrpC03
C:181-230
3b
1jrpE03
E:181-230
3c
1jrpG03
G:181-230
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
(63)
Homologous Superfamily
:
[code=3.30.465.10, no name defined]
(63)
Rhodobacter capsulatus. Organism_taxid: 1061.
(6)
4a
1jrpC04
C:231-344
4b
1jrpE04
E:231-344
4c
1jrpG04
G:231-344
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aldehyde Oxidoreductase; domain 3
(111)
Homologous Superfamily
:
[code=3.90.1170.50, no name defined]
(20)
Rhodobacter capsulatus. Organism_taxid: 1061.
(2)
5a
1jrpB01
B:2-124
5b
1jrpD01
D:2-124
5c
1jrpF01
F:2-124
5d
1jrpH01
H:2-124
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Rhodobacter capsulatus. Organism_taxid: 1061.
(6)
6a
1jrpA01
A:1-84
6b
1jrpC01
C:1-80
6c
1jrpE01
E:1-80
6d
1jrpG01
G:1-80
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.120, no name defined]
(29)
Rhodobacter capsulatus. Organism_taxid: 1061.
(6)
7a
1jrpC02
C:81-166
7b
1jrpE02
E:81-166
7c
1jrpG02
G:81-166
7d
1jrpA02
A:85-166
[
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Pfam Domains
(6, 24)
Info
all PFAM domains
1a: PFAM_FAD_binding_5_1jrpG01 (G:179-344)
1b: PFAM_FAD_binding_5_1jrpG02 (G:179-344)
1c: PFAM_FAD_binding_5_1jrpG03 (G:179-344)
1d: PFAM_FAD_binding_5_1jrpG04 (G:179-344)
2a: PFAM_Fer2_1jrpG05 (G:5-68)
2b: PFAM_Fer2_1jrpG06 (G:5-68)
2c: PFAM_Fer2_1jrpG07 (G:5-68)
2d: PFAM_Fer2_1jrpG08 (G:5-68)
3a: PFAM_Fer2_2_1jrpG09 (G:77-148)
3b: PFAM_Fer2_2_1jrpG10 (G:77-148)
3c: PFAM_Fer2_2_1jrpG11 (G:77-148)
3d: PFAM_Fer2_2_1jrpG12 (G:77-148)
4a: PFAM_Ald_Xan_dh_C2_1jrpH01 (H:132-705)
4b: PFAM_Ald_Xan_dh_C2_1jrpH02 (H:132-705)
4c: PFAM_Ald_Xan_dh_C2_1jrpH03 (H:132-705)
4d: PFAM_Ald_Xan_dh_C2_1jrpH04 (H:132-705)
5a: PFAM_Ald_Xan_dh_C_1jrpH05 (H:17-124)
5b: PFAM_Ald_Xan_dh_C_1jrpH06 (H:17-124)
5c: PFAM_Ald_Xan_dh_C_1jrpH07 (H:17-124)
5d: PFAM_Ald_Xan_dh_C_1jrpH08 (H:17-124)
6a: PFAM_CO_deh_flav_C_1jrpG13 (G:349-450)
6b: PFAM_CO_deh_flav_C_1jrpG14 (G:349-450)
6c: PFAM_CO_deh_flav_C_1jrpG15 (G:349-450)
6d: PFAM_CO_deh_flav_C_1jrpG16 (G:349-450)
View:
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(
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Organisms
(
)
(
)
Clan
:
FAD_PCMH
(53)
Family
:
FAD_binding_5
(22)
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
(6)
1a
FAD_binding_5-1jrpG01
G:179-344
1b
FAD_binding_5-1jrpG02
G:179-344
1c
FAD_binding_5-1jrpG03
G:179-344
1d
FAD_binding_5-1jrpG04
G:179-344
Clan
:
Fer2
(69)
Family
:
Fer2
(60)
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
(7)
2a
Fer2-1jrpG05
G:5-68
2b
Fer2-1jrpG06
G:5-68
2c
Fer2-1jrpG07
G:5-68
2d
Fer2-1jrpG08
G:5-68
Family
:
Fer2_2
(24)
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
(6)
3a
Fer2_2-1jrpG09
G:77-148
3b
Fer2_2-1jrpG10
G:77-148
3c
Fer2_2-1jrpG11
G:77-148
3d
Fer2_2-1jrpG12
G:77-148
Clan
:
no clan defined [family: Ald_Xan_dh_C2]
(24)
Family
:
Ald_Xan_dh_C2
(24)
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
(6)
4a
Ald_Xan_dh_C2-1jrpH01
H:132-705
4b
Ald_Xan_dh_C2-1jrpH02
H:132-705
4c
Ald_Xan_dh_C2-1jrpH03
H:132-705
4d
Ald_Xan_dh_C2-1jrpH04
H:132-705
Clan
:
no clan defined [family: Ald_Xan_dh_C]
(24)
Family
:
Ald_Xan_dh_C
(24)
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
(6)
5a
Ald_Xan_dh_C-1jrpH05
H:17-124
5b
Ald_Xan_dh_C-1jrpH06
H:17-124
5c
Ald_Xan_dh_C-1jrpH07
H:17-124
5d
Ald_Xan_dh_C-1jrpH08
H:17-124
Clan
:
no clan defined [family: CO_deh_flav_C]
(22)
Family
:
CO_deh_flav_C
(22)
Rhodobacter capsulatus (Rhodopseudomonas capsulata)
(6)
6a
CO_deh_flav_C-1jrpG13
G:349-450
6b
CO_deh_flav_C-1jrpG14
G:349-450
6c
CO_deh_flav_C-1jrpG15
G:349-450
6d
CO_deh_flav_C-1jrpG16
G:349-450
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