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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
1JRH
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
COMPLEX (ANTIBODY/ANTIGEN)
Authors
:
F. K. Winkler, S. Sogabe
Date
:
23 Sep 97 (Deposition) - 25 Mar 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : H,I,L
Biol. Unit 1: H,I,L (1x)
Keywords
:
Cytokine Receptor, Complex (Antibody/Antigen), Transmembrane, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Sogabe, F. Stuart, C. Henke, A. Bridges, G. Williams, A. Birch, F. K. Winkler, J. A. Robinson
Neutralizing Epitopes On The Extracellular Interferon Gamma Receptor (Ifngammar) Alpha-Chain Characterized By Homolog Scanning Mutagenesis And X-Ray Crystal Structure Of The A6 Fab-Ifngammar1-108 Complex.
J. Mol. Biol. V. 273 882 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019281 (V44I, chain I, )
2: VAR_017577 (C60Y, chain I, )
3: VAR_017578 (I70T, chain I, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019281
V
61
I
INGR1_HUMAN
Polymorphism
17175322
I
V
44
I
2
UniProt
VAR_017577
C
77
Y
INGR1_HUMAN
Disease (IMD27A)
---
I
C
60
Y
3
UniProt
VAR_017578
I
87
T
INGR1_HUMAN
Disease (IMD27A)
---
I
I
70
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:193-198)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
1
L:193-198
[
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (I:11-12)
Exon 1.3a (I:12-50)
Exon 1.4a (I:50-105)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3a
3: Boundary 1.3a/1.4a
4: Boundary 1.4a/1.5b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367739
1a
ENSE00002147702
chr6:
137540586-137540380
207
INGR1_HUMAN
1-29
29
1
I:11-12
2
1.3a
ENST00000367739
3a
ENSE00000764523
chr6:
137528214-137528100
115
INGR1_HUMAN
29-67
39
1
I:12-50
39
1.4a
ENST00000367739
4a
ENSE00000764522
chr6:
137527445-137527273
173
INGR1_HUMAN
67-125
59
1
I:50-105
56
1.5b
ENST00000367739
5b
ENSE00001719673
chr6:
137525641-137525469
173
INGR1_HUMAN
125-182
58
0
-
-
1.6b
ENST00000367739
6b
ENSE00002146269
chr6:
137524822-137524636
187
INGR1_HUMAN
183-245
63
0
-
-
1.7b
ENST00000367739
7b
ENSE00001707029
chr6:
137522145-137522018
128
INGR1_HUMAN
245-287
43
0
-
-
1.8
ENST00000367739
8
ENSE00001597426
chr6:
137519776-137518621
1156
INGR1_HUMAN
288-489
202
0
-
-
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SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d1jrhi_ (I:)
2a: SCOP_d1jrhh2 (H:114-221)
3a: SCOP_d1jrhl2 (L:108-207)
4a: SCOP_d1jrhh1 (H:1-113)
5a: SCOP_d1jrhl1 (L:1-107)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Interferon-gamma receptor alpha chain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1jrhi_
I:
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
2a
d1jrhh2
H:114-221
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
3a
d1jrhl2
L:108-207
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 6 [TaxId: 10090]
(12)
4a
d1jrhh1
H:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
5a
d1jrhl1
L:1-107
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_1jrhL02 (L:109-204)
1b: CATH_1jrhH02 (H:114-217)
1c: CATH_1jrhH01 (H:1-113)
1d: CATH_1jrhI00 (I:11-105)
1e: CATH_1jrhL01 (L:1-108)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1jrhL02
L:109-204
1b
1jrhH02
H:114-217
1c
1jrhH01
H:1-113
1d
1jrhI00
I:11-105
1e
1jrhL01
L:1-108
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Tissue_fac_1jrhI01 (I:11-96)
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Clan
:
E-set
(290)
Family
:
Tissue_fac
(23)
Homo sapiens (Human)
(23)
1a
Tissue_fac-1jrhI01
I:11-96
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Asymmetric Unit 1
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Asym.Unit (78 KB)
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