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1JRC
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (113 KB)
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(1)
Title
:
THE N67A MUTANT OF LACTOCOCCUS LACTIS DIHYDROOROTATE DEHYDROGENASE A
Authors
:
S. Norager, S. Arent, O. Bjornberg, M. Ottosen, L. Lo Leggio, K. F. Jensen, S. Larsen
Date
:
13 Aug 01 (Deposition) - 09 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Homodimer, Alpha-Beta Barrel, Flavoprotein, Orotate Complex, Mutant Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Norager, S. Arent, O. Bjornberg, M. Ottosen, L. Lo Leggio, K. F. Jensen, S. Larsen
Lactococcus Lactis Dihydroorotate Dehydrogenase A Mutants Reveal Important Facets Of The Enzymatic Function
J. Biol. Chem. V. 278 28812 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
2a: OROTIC ACID (OROa)
2b: OROTIC ACID (OROb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
2
ORO
2
Ligand/Ion
OROTIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:18 , SER A:19 , GLY A:20 , LYS A:43 , SER A:44 , ASN A:127 , LYS A:164 , VAL A:192 , ASN A:193 , GLY A:221 , THR A:248 , GLY A:249 , GLY A:250 , GLY A:271 , THR A:272 , ORO A:1313 , HOH A:1327 , HOH A:1333 , HOH A:1339 , HOH A:1630
BINDING SITE FOR RESIDUE FMN A 1312
2
AC2
SOFTWARE
LYS A:43 , MET A:69 , GLY A:70 , LEU A:71 , ASN A:127 , CYS A:130 , PRO A:131 , ASN A:132 , ASN A:193 , SER A:194 , FMN A:1312 , HOH A:1414 , HOH A:1415
BINDING SITE FOR RESIDUE ORO A 1313
3
AC3
SOFTWARE
ALA B:18 , SER B:19 , GLY B:20 , LYS B:43 , SER B:44 , ASN B:127 , LYS B:164 , VAL B:192 , ASN B:193 , GLY B:221 , THR B:248 , GLY B:249 , GLY B:250 , GLY B:271 , THR B:272 , ORO B:2313 , HOH B:2316 , HOH B:2333 , HOH B:2350
BINDING SITE FOR RESIDUE FMN B 2312
4
AC4
SOFTWARE
LYS B:43 , MET B:69 , GLY B:70 , LEU B:71 , ASN B:127 , CYS B:130 , PRO B:131 , ASN B:132 , ASN B:193 , SER B:194 , FMN B:2312 , HOH B:2407 , HOH B:2409
BINDING SITE FOR RESIDUE ORO B 2313
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: DHODEHASE_1 (A:38-57,B:38-57,A:38-57,B:38-57)
2: DHODEHASE_2 (A:245-265,B:245-265,A:245-265,B:24...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DHODEHASE_1
PS00911
Dihydroorotate dehydrogenase signature 1.
PYRDA_LACLC
38-57
2
A:38-57
B:38-57
PYRDA_LACLM
38-57
2
A:38-57
B:38-57
2
DHODEHASE_2
PS00912
Dihydroorotate dehydrogenase signature 2.
PYRDA_LACLC
245-265
2
A:245-265
B:245-265
PYRDA_LACLM
245-265
2
A:245-265
B:245-265
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1jrca_ (A:)
1b: SCOP_d1jrcb_ (B:)
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Dihydroorotate dehydrogenase
(90)
Lactococcus lactis, isozyme A [TaxId: 1358]
(9)
1a
d1jrca_
A:
1b
d1jrcb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1jrcA01 (A:1-52,A:71-194,A:221-311)
1b: CATH_1jrcB01 (B:1-52,B:71-194,B:221-311)
2a: CATH_1jrcA02 (A:53-70,A:195-220)
2b: CATH_1jrcB02 (B:53-70,B:195-220)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Lactococcus lactis. Organism_taxid: 1358.
(10)
1a
1jrcA01
A:1-52,A:71-194,A:221-311
1b
1jrcB01
B:1-52,B:71-194,B:221-311
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Dihydroorotate Dehydrogenase A; chain A, domain 2
(22)
Homologous Superfamily
:
Dihydroorotate Dehydrogenase A, chain A, domain 2
(22)
Lactococcus lactis. Organism_taxid: 1358.
(7)
2a
1jrcA02
A:53-70,A:195-220
2b
1jrcB02
B:53-70,B:195-220
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DHO_dh_1jrcB01 (B:1-293)
1b: PFAM_DHO_dh_1jrcB02 (B:1-293)
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Clan
:
TIM_barrel
(694)
Family
:
DHO_dh
(22)
Lactococcus lactis subsp. cremoris (strain MG1363)
(3)
1a
DHO_dh-1jrcB01
B:1-293
1b
DHO_dh-1jrcB02
B:1-293
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Asymmetric Unit 1
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Asym.Unit (118 KB)
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