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1JQY
Biol. Unit 2
Info
Asym.Unit (291 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (97 KB)
Biol.Unit 3 (97 KB)
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(1)
Title
:
HEAT-LABILE ENTEROTOXIN B-PENTAMER WITH LIGAND BMSC-0010
Authors
:
E. A. Merritt, W. G. J. Hol
Date
:
09 Aug 01 (Deposition) - 08 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.14
Chains
:
Asym. Unit : D,E,F,G,H,L,M,N,O,P,V,W,X,Y,Z
Biol. Unit 1: D,E,F,G,H (1x)
Biol. Unit 2: L,M,N,O,P (1x)
Biol. Unit 3: V,W,X,Y,Z (1x)
Keywords
:
Enterotoxin, Receptor, Ligand, B-Pentamer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Pickens, E. A. Merritt, M. Ahn, C. L. Verlinde, W. G. Hol, E. Fan
Anchor-Based Design Of Improved Cholera Toxin And E. Coli Heat-Labile Enterotoxin Receptor Binding Antagonists That Display Multiple Binding Modes.
Chem. Biol. V. 9 215 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32a)
1b: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32b)
1c: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32c)
1d: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32d)
1e: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32e)
1f: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32f)
1g: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32g)
1h: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32h)
1i: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32i)
1j: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32j)
1k: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32k)
1l: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32l)
1m: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32m)
1n: (3-NITRO-5-(3-MORPHOLIN-4-YL-PROPY... (A32n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A32
4
Ligand/Ion
(3-NITRO-5-(3-MORPHOLIN-4-YL-PROPYLAMINOCARBONYL)PHENYL)-GALACTOPYRANOSIDE
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Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLU E:11 , TYR E:12 , ARG E:13 , GLU E:51 , GLN E:56 , HIS E:57 , GLN E:61 , TRP E:88 , ASN E:90 , LYS E:91 , HOH E:139 , HOH E:177 , HOH E:191 , LYS F:34 , HOH L:135 , GLU M:79 , HOH M:130
BINDING SITE FOR RESIDUE A32 E 104
2
AC6
SOFTWARE
GLU L:11 , TYR L:12 , ARG L:13 , GLU L:51 , GLN L:56 , HIS L:57 , GLN L:61 , TRP L:88 , ASN L:90 , LYS L:91 , HOH L:154 , HOH L:155 , LYS M:34
BINDING SITE FOR RESIDUE A32 L 104
3
AC7
SOFTWARE
GLU G:79 , GLU M:11 , TYR M:12 , GLU M:51 , GLN M:56 , HIS M:57 , GLN M:61 , TRP M:88 , ASN M:90 , LYS M:91 , HOH M:150 , HOH M:151 , HOH M:153
BINDING SITE FOR RESIDUE A32 M 104
4
AC8
SOFTWARE
GLU O:51 , GLN O:56 , HIS O:57 , GLN O:61 , TRP O:88 , ASN O:90 , LYS O:91 , HOH O:132 , HOH O:177 , GLY P:33 , LYS P:34
BINDING SITE FOR RESIDUE A32 O 104
5
AC9
SOFTWARE
GLY L:33 , LYS L:34 , TYR P:12 , GLU P:51 , HIS P:57 , GLN P:61 , TRP P:88 , ASN P:90 , LYS P:91 , HOH P:120 , HOH P:141 , HOH P:180 , HOH P:182
BINDING SITE FOR RESIDUE A32 P 104
[
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]
SAPs(SNPs)/Variants
(1, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_ELBP_ECOLX_001 (T75A, chain L/M/N/O/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ELBP_ECOLX_001
*
T
96
A
ELBP_ECOLX
---
---
L/M/N/O/P
T
75
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 15)
Info
All SCOP Domains
1a: SCOP_d1jqyd_ (D:)
1b: SCOP_d1jqyv_ (V:)
1c: SCOP_d1jqyw_ (W:)
1d: SCOP_d1jqyx_ (X:)
1e: SCOP_d1jqyy_ (Y:)
1f: SCOP_d1jqyz_ (Z:)
1g: SCOP_d1jqye_ (E:)
1h: SCOP_d1jqyf_ (F:)
1i: SCOP_d1jqyg_ (G:)
1j: SCOP_d1jqyh_ (H:)
1k: SCOP_d1jqyl_ (L:)
1l: SCOP_d1jqym_ (M:)
1m: SCOP_d1jqyn_ (N:)
1n: SCOP_d1jqyo_ (O:)
1o: SCOP_d1jqyp_ (P:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Heat-labile toxin
(24)
Escherichia coli, type IB [TaxId: 562]
(21)
1a
d1jqyd_
D:
1b
d1jqyv_
V:
1c
d1jqyw_
W:
1d
d1jqyx_
X:
1e
d1jqyy_
Y:
1f
d1jqyz_
Z:
1g
d1jqye_
E:
1h
d1jqyf_
F:
1i
d1jqyg_
G:
1j
d1jqyh_
H:
1k
d1jqyl_
L:
1l
d1jqym_
M:
1m
d1jqyn_
N:
1n
d1jqyo_
O:
1o
d1jqyp_
P:
[
close SCOP info
]
CATH Domains
(1, 15)
Info
all CATH domains
1a: CATH_1jqyD00 (D:1-103)
1b: CATH_1jqyL00 (L:1-103)
1c: CATH_1jqyM00 (M:1-103)
1d: CATH_1jqyN00 (N:1-103)
1e: CATH_1jqyO00 (O:1-103)
1f: CATH_1jqyP00 (P:1-103)
1g: CATH_1jqyV00 (V:1-103)
1h: CATH_1jqyW00 (W:1-103)
1i: CATH_1jqyX00 (X:1-103)
1j: CATH_1jqyY00 (Y:1-103)
1k: CATH_1jqyZ00 (Z:1-103)
1l: CATH_1jqyE00 (E:1-103)
1m: CATH_1jqyF00 (F:1-103)
1n: CATH_1jqyG00 (G:1-103)
1o: CATH_1jqyH00 (H:1-103)
View:
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Classes
(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1jqyD00
D:1-103
1b
1jqyL00
L:1-103
1c
1jqyM00
M:1-103
1d
1jqyN00
N:1-103
1e
1jqyO00
O:1-103
1f
1jqyP00
P:1-103
1g
1jqyV00
V:1-103
1h
1jqyW00
W:1-103
1i
1jqyX00
X:1-103
1j
1jqyY00
Y:1-103
1k
1jqyZ00
Z:1-103
1l
1jqyE00
E:1-103
1m
1jqyF00
F:1-103
1n
1jqyG00
G:1-103
1o
1jqyH00
H:1-103
[
close CATH info
]
Pfam Domains
(1, 15)
Info
all PFAM domains
1a: PFAM_Enterotoxin_b_1jqyZ01 (Z:1-102)
1b: PFAM_Enterotoxin_b_1jqyZ02 (Z:1-102)
1c: PFAM_Enterotoxin_b_1jqyZ03 (Z:1-102)
1d: PFAM_Enterotoxin_b_1jqyZ04 (Z:1-102)
1e: PFAM_Enterotoxin_b_1jqyZ05 (Z:1-102)
1f: PFAM_Enterotoxin_b_1jqyZ06 (Z:1-102)
1g: PFAM_Enterotoxin_b_1jqyZ07 (Z:1-102)
1h: PFAM_Enterotoxin_b_1jqyZ08 (Z:1-102)
1i: PFAM_Enterotoxin_b_1jqyZ09 (Z:1-102)
1j: PFAM_Enterotoxin_b_1jqyZ10 (Z:1-102)
1k: PFAM_Enterotoxin_b_1jqyZ11 (Z:1-102)
1l: PFAM_Enterotoxin_b_1jqyZ12 (Z:1-102)
1m: PFAM_Enterotoxin_b_1jqyZ13 (Z:1-102)
1n: PFAM_Enterotoxin_b_1jqyZ14 (Z:1-102)
1o: PFAM_Enterotoxin_b_1jqyZ15 (Z:1-102)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Enterotoxin_b]
(23)
Family
:
Enterotoxin_b
(23)
Escherichia coli
(12)
1a
Enterotoxin_b-1jqyZ01
Z:1-102
1b
Enterotoxin_b-1jqyZ02
Z:1-102
1c
Enterotoxin_b-1jqyZ03
Z:1-102
1d
Enterotoxin_b-1jqyZ04
Z:1-102
1e
Enterotoxin_b-1jqyZ05
Z:1-102
1f
Enterotoxin_b-1jqyZ06
Z:1-102
1g
Enterotoxin_b-1jqyZ07
Z:1-102
1h
Enterotoxin_b-1jqyZ08
Z:1-102
1i
Enterotoxin_b-1jqyZ09
Z:1-102
1j
Enterotoxin_b-1jqyZ10
Z:1-102
1k
Enterotoxin_b-1jqyZ11
Z:1-102
1l
Enterotoxin_b-1jqyZ12
Z:1-102
1m
Enterotoxin_b-1jqyZ13
Z:1-102
1n
Enterotoxin_b-1jqyZ14
Z:1-102
1o
Enterotoxin_b-1jqyZ15
Z:1-102
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Asym.Unit (291 KB)
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