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1JQQ
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PEX13P(301-386) SH3 DOMAIN
Authors
:
A. Douangamath, O. Mayans, P. Barnett, B. Distel, M. Wilmanns
Date
:
08 Aug 01 (Deposition) - 06 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Compact Beta-Barrel Of Five Anti-Parrallel Beta-Strands, Protein Transport, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Douangamath, F. V. Filipp, A. T. J. Klein, P. Barnett, P. Zou, T. Voorn-Brouwer, M. C. Vega, O. Mayans, M. Sattler, B. Distel, M. Wilmanns
Topography For Independent Binding Of Alpha-Helical And Ppii-Helical Ligands To A Peroxisomal Sh3 Domain
Mol. Cell V. 10 1007 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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PROSITE Patterns/Profiles
(1, 4)
Info
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1: SH3 (A:12-78,B:12-78,C:12-77,D:12-78)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
PEX13_YEAST
306-372
4
A:12-78
B:12-78
C:12-77
D:12-78
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Exons
(1, 4)
Info
All Exons
Exon 1.1 (A:1-79 (gaps) | B:1-82 (gaps) | C:...)
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1: Boundary -/1.1
2: Boundary 1.1/-
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ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YLR191W
1
YLR191W.1
XII:537274-538434
1161
PEX13_YEAST
1-386
386
4
A:1-79 (gaps)
B:1-82 (gaps)
C:6-77 (gaps)
D:6-78
95
98
72
73
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1jqqa_ (A:)
1b: SCOP_d1jqqb_ (B:)
1c: SCOP_d1jqqc_ (C:)
1d: SCOP_d1jqqd_ (D:)
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Class
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All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Peroxisomal membrane protein Pex13p
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1jqqa_
A:
1b
d1jqqb_
B:
1c
d1jqqc_
C:
1d
d1jqqd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1jqqC00 (C:6-77)
1b: CATH_1jqqD00 (D:6-78)
1c: CATH_1jqqA00 (A:1-79)
1d: CATH_1jqqB00 (B:1-82)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Baker's yeast (Saccharomyces cerevisiae)
(21)
1a
1jqqC00
C:6-77
1b
1jqqD00
D:6-78
1c
1jqqA00
A:1-79
1d
1jqqB00
B:1-82
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_SH3_1_1jqqD01 (D:18-70)
1b: PFAM_SH3_1_1jqqD02 (D:18-70)
1c: PFAM_SH3_1_1jqqD03 (D:18-70)
1d: PFAM_SH3_1_1jqqD04 (D:18-70)
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Clan
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SH3
(175)
Family
:
SH3_1
(141)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(24)
1a
SH3_1-1jqqD01
D:18-70
1b
SH3_1-1jqqD02
D:18-70
1c
SH3_1-1jqqD03
D:18-70
1d
SH3_1-1jqqD04
D:18-70
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