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1JQI
Biol. Unit 1
Info
Asym.Unit (135 KB)
Biol.Unit 1 (255 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAT SHORT CHAIN ACYL-COA DEHYDROGENASE COMPLEXED WITH ACETOACETYL-COA
Authors
:
K. P. Battaile, J. Molin-Case, R. Paschke, M. Wang, D. Bennett, J. Vockl J. P. Kim
Date
:
07 Aug 01 (Deposition) - 13 Feb 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Flavoprotein, Enzyme-Inhibitor Complex, Oxidoreductase
(Keyword Search:
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Reference
:
K. P. Battaile, J. Molin-Case, R. Paschke, M. Wang, D. Bennett, J. Vockley, J. J. Kim
Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa: Comparison With Other Acyl-Coa Dehydrogenases.
J. Biol. Chem. V. 277 12200 2002
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ACETOACETYL-COENZYME A (CAAa)
1b: ACETOACETYL-COENZYME A (CAAb)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CAA
4
Ligand/Ion
ACETOACETYL-COENZYME A
2
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:94 , LEU A:98 , GLY A:136 , SER A:137 , ALA A:139 , ASN A:183 , PHE A:237 , MET A:241 , GLN A:242 , LEU A:244 , ASP A:245 , ARG A:248 , THR A:318 , TYR A:367 , GLU A:368 , GLY A:369 , FAD A:399 , HOH A:1018 , HOH A:1023 , HOH A:1219 , HOH A:1257
BINDING SITE FOR RESIDUE CAA A 400
2
AC2
SOFTWARE
VAL B:494 , LEU B:498 , GLY B:536 , SER B:537 , ALA B:539 , ASN B:583 , PHE B:637 , MET B:641 , GLN B:642 , LEU B:644 , ASP B:645 , ARG B:648 , THR B:718 , TYR B:767 , GLU B:768 , GLY B:769 , FAD B:799 , HOH B:1067 , HOH B:1089 , HOH B:1133 , HOH B:1135 , HOH B:1178 , HOH B:1204
BINDING SITE FOR RESIDUE CAA B 800
3
AC3
SOFTWARE
PHE A:128 , LEU A:130 , SER A:131 , GLY A:136 , SER A:137 , TRP A:161 , THR A:163 , GLN A:284 , ILE A:363 , THR A:370 , GLU A:372 , LEU A:376 , CAA A:400 , HOH A:1024 , HOH A:1026 , HOH A:1032 , HOH A:1074 , HOH A:1103 , ARG B:673 , PHE B:676 , LEU B:680 , LEU B:683 , GLN B:741 , ILE B:742 , GLY B:745 , HOH B:1004
BINDING SITE FOR RESIDUE FAD A 399
4
AC4
SOFTWARE
ARG A:273 , PHE A:276 , LEU A:283 , GLN A:341 , ILE A:342 , GLY A:345 , HOH A:1027 , PHE B:528 , LEU B:530 , SER B:531 , GLY B:536 , SER B:537 , TRP B:561 , THR B:563 , GLN B:684 , ILE B:763 , THR B:770 , GLU B:772 , LEU B:776 , CAA B:800 , HOH B:1002 , HOH B:1011 , HOH B:1054 , HOH B:1060 , HOH B:1072
BINDING SITE FOR RESIDUE FAD B 799
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ACYL_COA_DH_1 (A:129-141,B:529-541)
2: ACYL_COA_DH_2 (A:341-360,B:741-760)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACYL_COA_DH_1
PS00072
Acyl-CoA dehydrogenases signature 1.
ACADS_RAT
153-165
4
A:129-141
B:529-541
2
ACYL_COA_DH_2
PS00073
Acyl-CoA dehydrogenases signature 2.
ACADS_RAT
365-384
4
A:341-360
B:741-760
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1jqia1 (A:235-387)
1b: SCOP_d1jqib1 (B:635-787)
2a: SCOP_d1jqia2 (A:4-234)
2b: SCOP_d1jqib2 (B:404-634)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
(29)
Protein domain
:
Butyryl-CoA dehydrogenase, C-domain
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1jqia1
A:235-387
1b
d1jqib1
B:635-787
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
(32)
Protein domain
:
Butyryl-CoA dehydrogenase, NM domains
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
2a
d1jqia2
A:4-234
2b
d1jqib2
B:404-634
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1jqiA01 (A:6-125)
1b: CATH_1jqiB01 (B:406-525)
2a: CATH_1jqiA03 (A:244-384)
2b: CATH_1jqiB03 (B:644-784)
3a: CATH_1jqiA02 (A:126-243)
3b: CATH_1jqiB02 (B:526-643)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Butyryl-Coa Dehydrogenase, subunit A; domain 1
(28)
Homologous Superfamily
:
Butyryl-Coa Dehydrogenase, subunit A, domain 1
(28)
Norway rat (Rattus norvegicus)
(3)
1a
1jqiA01
A:6-125
1b
1jqiB01
B:406-525
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 3
(37)
Norway rat (Rattus norvegicus)
(3)
2a
1jqiA03
A:244-384
2b
1jqiB03
B:644-784
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 2
(35)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 2
(35)
Norway rat (Rattus norvegicus)
(3)
3a
1jqiA02
A:126-243
3b
1jqiB02
B:526-643
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Acyl_CoA_dh_1_1jqiB01 (B:634-783)
1b: PFAM_Acyl_CoA_dh_1_1jqiB02 (B:634-783)
2a: PFAM_Acyl_CoA_dh_M_1jqiB03 (B:527-578)
2b: PFAM_Acyl_CoA_dh_M_1jqiB04 (B:527-578)
3a: PFAM_Acyl_CoA_dh_N_1jqiB05 (B:411-523)
3b: PFAM_Acyl_CoA_dh_N_1jqiB06 (B:411-523)
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(
)
Organisms
(
)
(
)
Clan
:
Acyl-CoA_dh
(32)
Family
:
Acyl-CoA_dh_1
(24)
Rattus norvegicus (Rat)
(1)
1a
Acyl-CoA_dh_1-1jqiB01
B:634-783
1b
Acyl-CoA_dh_1-1jqiB02
B:634-783
Clan
:
no clan defined [family: Acyl-CoA_dh_M]
(24)
Family
:
Acyl-CoA_dh_M
(24)
Rattus norvegicus (Rat)
(1)
2a
Acyl-CoA_dh_M-1jqiB03
B:527-578
2b
Acyl-CoA_dh_M-1jqiB04
B:527-578
Clan
:
no clan defined [family: Acyl-CoA_dh_N]
(23)
Family
:
Acyl-CoA_dh_N
(23)
Rattus norvegicus (Rat)
(1)
3a
Acyl-CoA_dh_N-1jqiB05
B:411-523
3b
Acyl-CoA_dh_N-1jqiB06
B:411-523
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