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1JPL
Biol. Unit 10
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Asym.Unit (121 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 10 (58 KB)
Biol.Unit 2 (30 KB)
Biol.Unit 3 (31 KB)
Biol.Unit 4 (31 KB)
Biol.Unit 5 (115 KB)
Biol.Unit 6 (114 KB)
Biol.Unit 7 (115 KB)
Biol.Unit 8 (115 KB)
Biol.Unit 9 (59 KB)
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(1)
Title
:
GGA3 VHS DOMAIN COMPLEXED WITH C-TERMINAL PEPTIDE FROM CATION-INDEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR
Authors
:
S. Misra, R. Puertollano, J. S. Bonifacino, J. H. Hurley
Date
:
02 Aug 01 (Deposition) - 27 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Biol. Unit 6: A,B,C,D,E,F,G,H (1x)
Biol. Unit 7: A,B,C,D,E,F,G,H (1x)
Biol. Unit 8: A,B,C,D,E,F,G,H (1x)
Biol. Unit 9: C,D,G,H (1x)
Biol. Unit 10: A,B,E,F (1x)
Keywords
:
Protein-Peptide Complex; Vhs Domain; Dxxll Sorting Signal, Signaling Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Misra, R. Puertollano, Y. Kato, J. S. Bonifacino, J. H. Hurley
Structural Basis For Acidic-Cluster-Dileucine Sorting-Signal Recognition By Vhs Domains.
Nature V. 415 933 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
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No.
Name
Count
Type
Full Name
1
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_075715 (K132R, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_075715
K
132
R
GGA3_HUMAN
Polymorphism
117805695
A/B
K
132
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: VHS (A:16-146,B:16-146)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VHS
PS50179
VHS domain profile.
GGA3_HUMAN
16-146
2
A:16-146
B:16-146
-
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1jpla_ (A:)
1b: SCOP_d1jplc_ (C:)
1c: SCOP_d1jpld_ (D:)
1d: SCOP_d1jplb_ (B:)
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Class
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All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ENTH/VHS domain
(36)
Family
:
VHS domain
(16)
Protein domain
:
ADP-ribosylation factor binding protein Gga3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1jpla_
A:
1b
d1jplc_
C:
1c
d1jpld_
D:
1d
d1jplb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1jplB00 (B:204-156)
1b: CATH_1jplC00 (C:204-156)
1c: CATH_1jplA00 (A:202-157)
1d: CATH_1jplD00 (D:202-157)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.90, no name defined]
(33)
Human (Homo sapiens)
(20)
1a
1jplB00
B:204-156
1b
1jplC00
C:204-156
1c
1jplA00
A:202-157
1d
1jplD00
D:202-157
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_VHS_1jplD01 (D:3-142)
1b: PFAM_VHS_1jplD02 (D:3-142)
1c: PFAM_VHS_1jplD03 (D:3-142)
1d: PFAM_VHS_1jplD04 (D:3-142)
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Clan
:
ENTH_VHS
(15)
Family
:
VHS
(11)
Homo sapiens (Human)
(11)
1a
VHS-1jplD01
D:3-142
1b
VHS-1jplD02
D:3-142
1c
VHS-1jplD03
D:3-142
1d
VHS-1jplD04
D:3-142
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Asymmetric Unit 1
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Asym.Unit (121 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 10 (58 KB)
Header - Biol.Unit 10
Biol.Unit 2 (30 KB)
Header - Biol.Unit 2
Biol.Unit 3 (31 KB)
Header - Biol.Unit 3
Biol.Unit 4 (31 KB)
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Biol.Unit 5 (115 KB)
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Biol.Unit 6 (114 KB)
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Biol.Unit 7 (115 KB)
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Biol.Unit 8 (115 KB)
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Biol.Unit 9 (59 KB)
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