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1JP4
Asym. Unit
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Asym.Unit (62 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ENZYME DISPLAYING BOTH INOSITOL-POLYPHOSPHATE 1-PHOSPHATASE AND 3'-PHOSPHOADENOSINE-5'-PHOSPHATE PHOSPHATASE ACTIVITIES
Authors
:
S. Patel, L. Yenush, P. L. Rodriguez, R. Serrano, T. L. Blundell
Date
:
01 Aug 01 (Deposition) - 08 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Product Complex, Sugar Nucleotidase Fold, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Patel, L. Yenush, P. L. Rodriguez, R. Serrano, T. L. Blundell
Crystal Structure Of An Enzyme Displaying Both Inositol-Polyphosphate-1-Phosphatase And 3'-Phosphoadenosine-5'-Phosphate Phosphatase Activities: A Novel Target Of Lithium Therapy.
J. Mol. Biol. V. 315 677 2002
(for further references see the
PDB file header
)
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
2a: BETA-MERCAPTOETHANOL (BMEa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
1
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:51 , GLU A:74 , ASP A:117 , VAL A:119 , ASP A:120 , GLY A:121 , THR A:122 , AMP A:601 , MG A:701 , MG A:702 , MG A:703 , HOH A:812 , HOH A:840 , HOH A:929 , HOH A:1216 , HOH A:1218 , HOH A:1219
BINDING SITE FOR RESIDUE PO4 A 501
2
AC2
SOFTWARE
ASP A:117 , ASP A:120 , ASP A:247 , PO4 A:501 , AMP A:601 , MG A:702 , HOH A:840
BINDING SITE FOR RESIDUE MG A 701
3
AC3
SOFTWARE
GLU A:74 , ASP A:117 , VAL A:119 , PO4 A:501 , MG A:701 , HOH A:811
BINDING SITE FOR RESIDUE MG A 702
4
AC4
SOFTWARE
GLU A:74 , PO4 A:501 , HOH A:929 , HOH A:1216 , HOH A:1217 , HOH A:1218 , HOH A:1219
BINDING SITE FOR RESIDUE MG A 703
5
AC5
SOFTWARE
ASP A:120 , THR A:195 , HIS A:198 , GLY A:219 , GLY A:220 , LYS A:224 , PHE A:238 , GLY A:242 , CYS A:243 , ASP A:247 , PO4 A:501 , MG A:701 , HOH A:828 , HOH A:840 , HOH A:853 , HOH A:900 , HOH A:929
BINDING SITE FOR RESIDUE AMP A 601
6
AC6
SOFTWARE
GLN A:55 , CYS A:59 , ILE A:71 , GLY A:73 , HOH A:916 , HOH A:1117
BINDING SITE FOR RESIDUE BME A 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: IMP_1 (A:114-126)
2: IMP_2 (A:246-260)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMP_1
PS00629
Inositol monophosphatase family signature 1.
BPNT1_RAT
114-126
1
A:114-126
2
IMP_2
PS00630
Inositol monophosphatase family signature 2.
BPNT1_RAT
246-260
1
A:246-260
[
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Exons
(8, 8)
Info
All Exons
Exon 1.1 (A:5-36)
Exon 1.2 (A:37-74)
Exon 1.3 (A:74-84 (gaps))
Exon 1.4 (A:85-89)
Exon 1.5 (A:89-119)
Exon 1.6 (A:120-185)
Exon 1.7 (A:186-221)
Exon 1.8 (A:221-269)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000003249
1
ENSRNOE00000022972
chr13:
101351124-101351231
108
BPNT1_RAT
1-36
36
1
A:5-36
32
1.2
ENSRNOT00000003249
2
ENSRNOE00000022988
chr13:
101354970-101355082
113
BPNT1_RAT
37-74
38
1
A:37-74
38
1.3
ENSRNOT00000003249
3
ENSRNOE00000354877
chr13:
101355110-101355140
31
BPNT1_RAT
74-84
11
1
A:74-84 (gaps)
11
1.4
ENSRNOT00000003249
4
ENSRNOE00000434617
chr13:
101357260-101357272
13
BPNT1_RAT
85-89
5
1
A:85-89
5
1.5
ENSRNOT00000003249
5
ENSRNOE00000023022
chr13:
101358488-101358579
92
BPNT1_RAT
89-119
31
1
A:89-119
31
1.6
ENSRNOT00000003249
6
ENSRNOE00000023036
chr13:
101362075-101362272
198
BPNT1_RAT
120-185
66
1
A:120-185
66
1.7
ENSRNOT00000003249
7
ENSRNOE00000023055
chr13:
101363822-101363927
106
BPNT1_RAT
186-221
36
1
A:186-221
36
1.8
ENSRNOT00000003249
8
ENSRNOE00000023075
chr13:
101366465-101367549
1085
BPNT1_RAT
221-269
49
1
A:221-269
49
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jp4a_ (A:)
View:
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(
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(
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(
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
PIPase
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1jp4a_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1jp4A01 (A:5-179)
2a: CATH_1jp4A02 (A:180-308)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Norway rat (Rattus norvegicus)
(1)
1a
1jp4A01
A:5-179
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Norway rat (Rattus norvegicus)
(1)
2a
1jp4A02
A:180-308
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Inositol_P_1jp4A01 (A:8-303)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Phospoesterase
(42)
Family
:
Inositol_P
(8)
Rattus norvegicus (Rat)
(1)
1a
Inositol_P-1jp4A01
A:8-303
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Chain A
Asymmetric Unit 1
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