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1JOW
Biol. Unit 1
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Asym.Unit (80 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX OF HUMAN CDK6 AND A VIRAL CYCLIN
Authors
:
U. Schulze-Gahmen, S. H. Kim
Date
:
31 Jul 01 (Deposition) - 27 Feb 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cdk-Cyclin Complex, Cyclin Fold, Cell Cycle/Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Schulze-Gahmen, S. H. Kim
Structural Basis For Cdk6 Activation By A Virus-Encoded Cyclin.
Nat. Struct. Biol. V. 9 177 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_041978 (D110N, chain B, )
2: VAR_072638 (A197T, chain B, )
3: VAR_041979 (P199L, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041978
D
110
N
CDK6_HUMAN
Polymorphism
35654944
B
D
110
N
2
UniProt
VAR_072638
A
197
T
CDK6_HUMAN
Disease (MCPH12)
---
B
A
197
T
3
UniProt
VAR_041979
P
199
L
CDK6_HUMAN
Unclassified
---
B
P
199
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (B:24-43)
2: CYCLINS (A:52-83)
3: PROTEIN_KINASE_ST (B:141-153)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK6_HUMAN
19-43
1
B:24-43
2
CYCLINS
PS00292
Cyclins signature.
CGH2_SHV21
52-83
1
A:52-83
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK6_HUMAN
141-153
1
B:141-153
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1jowa1 (A:9-148)
1b: SCOP_d1jowa2 (A:149-254)
2a: SCOP_d1jowb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
Viral cyclin
(7)
Herpesvirus saimiri [TaxId: 10381]
(5)
1a
d1jowa1
A:9-148
1b
d1jowa2
A:149-254
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK6
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
2a
d1jowb_
B:
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1jowB01 (B:11-102)
2a: CATH_1jowA01 (A:37-148)
2b: CATH_1jowA02 (A:149-254)
3a: CATH_1jowB02 (B:103-299)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Herpesvirus saimiri (Saimiriine herpesvirus 2)
(2)
1a
1jowB01
B:11-102
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Herpesvirus saimiri (Saimiriine herpesvirus 2)
(2)
2a
1jowA01
A:37-148
2b
1jowA02
A:149-254
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Herpesvirus saimiri (Saimiriine herpesvirus 2)
(2)
3a
1jowB02
B:103-299
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Cyclin_N_1jowA01 (A:22-148)
2a: PFAM_Pkinase_1jowB01 (B:13-300)
3a: PFAM_Herp_Cyclin_1jowA02 (A:149-254)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Cyclin
(63)
Family
:
Cyclin_N
(51)
Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri)
(2)
1a
Cyclin_N-1jowA01
A:22-148
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
2a
Pkinase-1jowB01
B:13-300
Clan
:
no clan defined [family: Herp-Cyclin]
(2)
Family
:
Herp-Cyclin
(2)
Saimiriine herpesvirus 2 (strain 11) (SaHV-2) (Herpesvirus saimiri)
(2)
3a
Herp-Cyclin-1jowA02
A:149-254
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