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1JOF
Biol. Unit 2
Info
Asym.Unit (459 KB)
Biol.Unit 1 (227 KB)
Biol.Unit 2 (227 KB)
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(1)
Title
:
NEUROSPORA CRASSA 3-CARBOXY-CIS,CIS-MUCOANTE LACTONIZING ENZYME
Authors
:
T. Kajander, M. C. Merckel, A. Thompson, A. M. Deacon, P. Mazur, J. W. Kozarich, A. Goldman
Date
:
28 Jul 01 (Deposition) - 12 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Beta-Propeller, Homotetramer, Semet-Protein, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kajander, M. C. Merckel, A. Thompson, A. M. Deacon, P. Mazur, J. W. Kozarich, A. Goldman
The Structure Of Neurospora Crassa 3-Carboxy-Cis, Cis-Muconate Lactonizing Enzyme, A Beta Propeller Cycloisomerase.
Structure V. 10 483 2002
(for further references see the
PDB file header
)
[
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]
Hetero Components
(4, 53)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
1g: BETA-MERCAPTOETHANOL (BMEg)
1h: BETA-MERCAPTOETHANOL (BMEh)
1i: BETA-MERCAPTOETHANOL (BMEi)
1j: BETA-MERCAPTOETHANOL (BMEj)
1k: BETA-MERCAPTOETHANOL (BMEk)
1l: BETA-MERCAPTOETHANOL (BMEl)
1m: BETA-MERCAPTOETHANOL (BMEm)
1n: BETA-MERCAPTOETHANOL (BMEn)
1o: BETA-MERCAPTOETHANOL (BMEo)
1p: BETA-MERCAPTOETHANOL (BMEp)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2ba: SELENOMETHIONINE (MSEba)
2bb: SELENOMETHIONINE (MSEbb)
2bc: SELENOMETHIONINE (MSEbc)
2bd: SELENOMETHIONINE (MSEbd)
2be: SELENOMETHIONINE (MSEbe)
2bf: SELENOMETHIONINE (MSEbf)
2bg: SELENOMETHIONINE (MSEbg)
2bh: SELENOMETHIONINE (MSEbh)
2bi: SELENOMETHIONINE (MSEbi)
2bj: SELENOMETHIONINE (MSEbj)
2bk: SELENOMETHIONINE (MSEbk)
2bl: SELENOMETHIONINE (MSEbl)
2bm: SELENOMETHIONINE (MSEbm)
2bn: SELENOMETHIONINE (MSEbn)
2bo: SELENOMETHIONINE (MSEbo)
2bp: SELENOMETHIONINE (MSEbp)
2bq: SELENOMETHIONINE (MSEbq)
2br: SELENOMETHIONINE (MSEbr)
2bs: SELENOMETHIONINE (MSEbs)
2bt: SELENOMETHIONINE (MSEbt)
2bu: SELENOMETHIONINE (MSEbu)
2bv: SELENOMETHIONINE (MSEbv)
2bw: SELENOMETHIONINE (MSEbw)
2bx: SELENOMETHIONINE (MSEbx)
2by: SELENOMETHIONINE (MSEby)
2bz: SELENOMETHIONINE (MSEbz)
2c: SELENOMETHIONINE (MSEc)
2ca: SELENOMETHIONINE (MSEca)
2cb: SELENOMETHIONINE (MSEcb)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: PIPERAZINE-N,N'-BIS(2-ETHANESULFON... (PINa)
3b: PIPERAZINE-N,N'-BIS(2-ETHANESULFON... (PINb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
8
Ligand/Ion
BETA-MERCAPTOETHANOL
2
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
3
PIN
1
Ligand/Ion
PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC4 (SOFTWARE)
08: CC1 (SOFTWARE)
09: CC2 (SOFTWARE)
10: CC3 (SOFTWARE)
11: CC4 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
ARG E:216 , TYR E:231 , HOH E:1083
BINDING SITE FOR RESIDUE SO4 E 561
02
AC6
SOFTWARE
PRO F:189 , ARG F:216 , TYR F:231 , HOH F:1084
BINDING SITE FOR RESIDUE SO4 F 661
03
AC7
SOFTWARE
ARG G:216 , TYR G:231 , HOH G:1283
BINDING SITE FOR RESIDUE SO4 G 761
04
AC8
SOFTWARE
PRO H:189 , ARG H:216 , TYR H:231
BINDING SITE FOR RESIDUE SO4 H 861
05
BC1
SOFTWARE
ARG F:86 , PHE F:117 , ARG G:349 , PHE H:278 , GLU H:279 , PRO H:305 , GLU H:331 , TRP H:333 , ARG H:349
BINDING SITE FOR RESIDUE PIN H 9078
06
BC2
SOFTWARE
ARG A:290 , CYS A:292 , ALA E:176
BINDING SITE FOR RESIDUE BME A 367
07
BC4
SOFTWARE
ARG B:290 , CYS B:292 , ALA F:176
BINDING SITE FOR RESIDUE BME B 9013
08
CC1
SOFTWARE
ARG E:290 , CYS E:292
BINDING SITE FOR RESIDUE BME E 566
09
CC2
SOFTWARE
HIS E:3 , CYS E:317 , TRP E:319 , TRP E:363
BINDING SITE FOR RESIDUE BME E 599
10
CC3
SOFTWARE
ALA B:176 , ARG F:290 , CYS F:292
BINDING SITE FOR RESIDUE BME F 666
11
CC4
SOFTWARE
HIS F:3 , CYS F:317 , TRP F:319 , TRP F:363
BINDING SITE FOR RESIDUE BME F 699
12
CC5
SOFTWARE
ARG G:290 , CYS G:292
BINDING SITE FOR RESIDUE BME G 766
13
CC6
SOFTWARE
HIS G:3 , CYS G:317 , TRP G:319 , TRP G:363
BINDING SITE FOR RESIDUE BME G 799
14
CC7
SOFTWARE
ARG H:290 , CYS H:292
BINDING SITE FOR RESIDUE BME H 1866
15
CC8
SOFTWARE
HIS H:3 , CYS H:317 , TRP H:319 , TRP H:363
BINDING SITE FOR RESIDUE BME H 1899
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1jofa_ (A:)
1b: SCOP_d1jofb_ (B:)
1c: SCOP_d1jofc_ (C:)
1d: SCOP_d1jofd_ (D:)
1e: SCOP_d1jofe_ (E:)
1f: SCOP_d1joff_ (F:)
1g: SCOP_d1jofg_ (G:)
1h: SCOP_d1jofh_ (H:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
3-carboxy-cis,cis-mucoante lactonizing enzyme
(1)
Family
:
3-carboxy-cis,cis-mucoante lactonizing enzyme
(1)
Protein domain
:
3-carboxy-cis,cis-mucoante lactonizing enzyme
(1)
Fungus (Neurospora crassa) [TaxId: 5141]
(1)
1a
d1jofa_
A:
1b
d1jofb_
B:
1c
d1jofc_
C:
1d
d1jofd_
D:
1e
d1jofe_
E:
1f
d1joff_
F:
1g
d1jofg_
G:
1h
d1jofh_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1jofA00 (A:1-365)
1b: CATH_1jofB00 (B:1-365)
1c: CATH_1jofC00 (C:1-365)
1d: CATH_1jofD00 (D:1-365)
1e: CATH_1jofE00 (E:1-365)
1f: CATH_1jofF00 (F:1-365)
1g: CATH_1jofG00 (G:1-365)
1h: CATH_1jofH00 (H:1-365)
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Neurospora crassa. Organism_taxid: 5141.
(1)
1a
1jofA00
A:1-365
1b
1jofB00
B:1-365
1c
1jofC00
C:1-365
1d
1jofD00
D:1-365
1e
1jofE00
E:1-365
1f
1jofF00
F:1-365
1g
1jofG00
G:1-365
1h
1jofH00
H:1-365
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Lactonase_1jofH01 (H:4-305)
1b: PFAM_Lactonase_1jofH02 (H:4-305)
1c: PFAM_Lactonase_1jofH03 (H:4-305)
1d: PFAM_Lactonase_1jofH04 (H:4-305)
1e: PFAM_Lactonase_1jofH05 (H:4-305)
1f: PFAM_Lactonase_1jofH06 (H:4-305)
1g: PFAM_Lactonase_1jofH07 (H:4-305)
1h: PFAM_Lactonase_1jofH08 (H:4-305)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
Lactonase
(3)
Neurospora crassa
(1)
1a
Lactonase-1jofH01
H:4-305
1b
Lactonase-1jofH02
H:4-305
1c
Lactonase-1jofH03
H:4-305
1d
Lactonase-1jofH04
H:4-305
1e
Lactonase-1jofH05
H:4-305
1f
Lactonase-1jofH06
H:4-305
1g
Lactonase-1jofH07
H:4-305
1h
Lactonase-1jofH08
H:4-305
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