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Asym. Unit
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Asym.Unit (297 KB)
Biol.Unit 1 (291 KB)
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(1)
Title
:
STRUCTURE OF ADENYLYLSULFATE REDUCTASE FROM THE HYPERTHERMOPHILIC ARCHAEOGLOBUS FULGIDUS AT 1.6 RESOLUTION
Authors
:
G. Fritz, A. Roth, A. Schiffer, T. Buechert, G. Bourenkov, H. D. Bartunik, H. Huber, K. O. Stetter, P. M. Kroneck, U. Ermler
Date
:
26 Jul 01 (Deposition) - 27 Mar 02 (Release) - 31 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Sulfur Metabolism, Adenylylsulfate Reductase, Iron-Sulfur Flavoprotein, Crystal Structure, Catalysis, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Fritz, A. Roth, A. Schiffer, T. Buchert, G. Bourenkov, H. D. Bartunik, H. Huber, K. O. Stetter, P. M. Kroneck, U. Ermler
Structure Of Adenylylsulfate Reductase From The Hyperthermophilic Archaeoglobus Fulgidus At 1. 6-A Resolution
Proc. Natl. Acad. Sci. Usa V. 99 1836 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: IRON/SULFUR CLUSTER (SF4a)
2b: IRON/SULFUR CLUSTER (SF4b)
2c: IRON/SULFUR CLUSTER (SF4c)
2d: IRON/SULFUR CLUSTER (SF4d)
3a: SULFITE ION (SO3a)
3b: SULFITE ION (SO3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
3
SO3
2
Ligand/Ion
SULFITE ION
[
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]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:74 , TRP A:234 , ARG A:265 , MET A:365 , HIS A:398 , FAD A:1000 , HOH A:5041 , HOH A:7001
BINDING SITE FOR RESIDUE SO3 A 1001
2
AC2
SOFTWARE
ASN C:2074 , ARG C:2265 , MET C:2365 , HIS C:2398 , FAD C:3000 , HOH C:5001
BINDING SITE FOR RESIDUE SO3 C 3001
3
AC3
SOFTWARE
GLY A:29 , GLY A:31 , PHE A:32 , SER A:33 , GLU A:56 , LYS A:57 , SER A:63 , GLY A:64 , ALA A:65 , VAL A:66 , LEU A:70 , ALA A:72 , ILE A:73 , ASN A:74 , VAL A:174 , PHE A:175 , ILE A:176 , ALA A:213 , THR A:214 , GLY A:215 , TRP A:234 , TYR A:235 , ALA A:236 , ASP A:239 , SER A:242 , MET A:365 , SER A:397 , GLY A:438 , ASP A:439 , PHE A:448 , SER A:449 , SER A:452 , SO3 A:1001 , HOH A:5121 , HOH A:5316 , HOH A:5321 , HOH A:5718 , HOH A:7001 , TRP B:748 , HOH B:5045
BINDING SITE FOR RESIDUE FAD A 1000
4
AC4
SOFTWARE
GLY C:2029 , GLY C:2030 , GLY C:2031 , PHE C:2032 , SER C:2033 , GLU C:2056 , LYS C:2057 , SER C:2063 , GLY C:2064 , ALA C:2065 , VAL C:2066 , LEU C:2070 , ALA C:2072 , ILE C:2073 , ASN C:2074 , VAL C:2174 , PHE C:2175 , ILE C:2176 , ALA C:2213 , THR C:2214 , GLY C:2215 , TRP C:2234 , TYR C:2235 , ALA C:2236 , ASP C:2239 , SER C:2242 , MET C:2365 , THR C:2366 , SER C:2397 , GLY C:2438 , ASP C:2439 , PHE C:2448 , SER C:2449 , SER C:2452 , SO3 C:3001 , HOH C:5008 , HOH C:5048 , HOH C:5059 , HOH C:5197 , HOH C:5320 , HOH C:5621 , TRP D:2748
BINDING SITE FOR RESIDUE FAD C 3000
5
AC5
SOFTWARE
SER B:703 , CYS B:725 , ASN B:741 , CYS B:747 , TRP B:748 , GLU B:749 , CYS B:750 , TYR B:751 , SER B:752 , CYS B:753
BINDING SITE FOR RESIDUE SF4 B 1100
6
AC6
SOFTWARE
CYS B:710 , ASP B:711 , GLY B:712 , CYS B:713 , THR B:719 , ALA B:720 , CYS B:721 , CYS B:757 , ILE B:762
BINDING SITE FOR RESIDUE SF4 B 1110
7
AC7
SOFTWARE
SER D:2703 , CYS D:2725 , PRO D:2726 , CYS D:2747 , TRP D:2748 , CYS D:2750 , TYR D:2751 , CYS D:2753
BINDING SITE FOR RESIDUE SF4 D 3100
8
AC8
SOFTWARE
CYS D:2710 , ASP D:2711 , GLY D:2712 , CYS D:2713 , THR D:2719 , ALA D:2720 , CYS D:2721 , CYS D:2757 , GLN D:2759 , ILE D:2762
BINDING SITE FOR RESIDUE SF4 D 3110
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1jnza1 (A:503-643)
1b: SCOP_d1jnzc1 (C:2503-2643)
2a: SCOP_d1jnzb_ (B:)
2b: SCOP_d1jnzd_ (D:)
3a: SCOP_d1jnza3 (A:257-401)
3b: SCOP_d1jnzc3 (C:2257-2401)
4a: SCOP_d1jnza2 (A:2-256,A:402-502)
4b: SCOP_d1jnzc2 (C:2002-2256,C:2402-2502)
View:
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Classes
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)
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Folds
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Superfamilies
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Spectrin repeat-like
(186)
Superfamily
:
Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
(26)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
(26)
Protein domain
:
Adenylylsulfate reductase A subunit
(2)
Archaeoglobus fulgidus [TaxId: 2234]
(2)
1a
d1jnza1
A:503-643
1b
d1jnzc1
C:2503-2643
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
4Fe-4S ferredoxins
(143)
Family
:
Ferredoxin domains from multidomain proteins
(69)
Protein domain
:
Adenylylsulfate reductase B subunit
(6)
Archaeoglobus fulgidus [TaxId: 2234]
(6)
2a
d1jnzb_
B:
2b
d1jnzd_
D:
Fold
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Superfamily
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
(45)
Protein domain
:
Adenylylsulfate reductase A subunit
(2)
Archaeoglobus fulgidus [TaxId: 2234]
(2)
3a
d1jnza3
A:257-401
3b
d1jnzc3
C:2257-2401
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
(45)
Protein domain
:
Adenylylsulfate reductase A subunit
(2)
Archaeoglobus fulgidus [TaxId: 2234]
(2)
4a
d1jnza2
A:2-256,A:402-502
4b
d1jnzc2
C:2002-2256,C:2402-2502
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1jnzB01 (B:702-767)
1b: CATH_1jnzD01 (D:2702-2767)
2a: CATH_1jnzA01 (A:12-261,A:394-487,A:615-634)
2b: CATH_1jnzC01 (C:2012-2261,C:2394-2487,C:2615-2634)
3a: CATH_1jnzA02 (A:262-393)
3b: CATH_1jnzC02 (C:2262-2393)
4a: CATH_1jnzA03 (A:488-608)
4b: CATH_1jnzC03 (C:2488-2608)
View:
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.20, no name defined]
(120)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm4304.
(2)
1a
1jnzB01
B:702-767
1b
1jnzD01
D:2702-2767
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm4304.
(2)
2a
1jnzA01
A:12-261,A:394-487,A:615-634
2b
1jnzC01
C:2012-2261,C:2394-2487,C:2615-2634
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Flavocytochrome C3; Chain A, domain 1
(40)
Homologous Superfamily
:
Flavocytochrome C3; Chain A, domain 1
(40)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm4304.
(2)
3a
1jnzA02
A:262-393
3b
1jnzC02
C:2262-2393
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(192)
Homologous Superfamily
:
[code=1.20.58.100, no name defined]
(37)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm4304.
(2)
4a
1jnzA03
A:488-608
4b
1jnzC03
C:2488-2608
[
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]
Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_Fer4_1jnzD01 (D:2740-2763)
1b: PFAM_Fer4_1jnzD02 (D:2740-2763)
2a: PFAM_FAD_binding_2_1jnzC01 (C:2024-2267)
2b: PFAM_FAD_binding_2_1jnzC02 (C:2024-2267)
3a: PFAM_APS_reductase_C_1jnzD03 (D:2764-2847)
3b: PFAM_APS_reductase_C_1jnzD04 (D:2764-2847)
4a: PFAM_Succ_DH_flav_C_1jnzC03 (C:2519-2641)
4b: PFAM_Succ_DH_flav_C_1jnzC04 (C:2519-2641)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
4Fe-4S
(51)
Family
:
Fer4
(18)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(10)
1a
Fer4-1jnzD01
D:2740-2763
1b
Fer4-1jnzD02
D:2740-2763
Clan
:
NADP_Rossmann
(1239)
Family
:
FAD_binding_2
(21)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(2)
2a
FAD_binding_2-1jnzC01
C:2024-2267
2b
FAD_binding_2-1jnzC02
C:2024-2267
Clan
:
no clan defined [family: APS-reductase_C]
(2)
Family
:
APS-reductase_C
(2)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(2)
3a
APS-reductase_C-1jnzD03
D:2764-2847
3b
APS-reductase_C-1jnzD04
D:2764-2847
Clan
:
no clan defined [family: Succ_DH_flav_C]
(11)
Family
:
Succ_DH_flav_C
(11)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(2)
4a
Succ_DH_flav_C-1jnzC03
C:2519-2641
4b
Succ_DH_flav_C-1jnzC04
C:2519-2641
[
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