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1JNF
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
RABBIT SERUM TRANSFERRIN AT 2.6 A RESOLUTION.
Authors
:
D. R. Hall, J. M. Hadden, G. A. Leonard, S. Bailey, M. Neu, M. Winn, P. F. Lindley
Date
:
24 Jul 01 (Deposition) - 01 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Alpha Protein, Bilobal, Iron Transport, Metal Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Hall, J. M. Hadden, G. A. Leonard, S. Bailey, M. Neu, M. Winn, P. F. Lindley
The Crystal And Molecular Structures Of Diferric Porcine And Rabbit Serum Transferrins At Resolutions Of 2. 15 And 2. 60 A, Respectively.
Acta Crystallogr. , Sect. D V. 58 70 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
CO3
2
Ligand/Ion
CARBONATE ION
3
FE
2
Ligand/Ion
FE (III) ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:63 , TYR A:95 , THR A:120 , ARG A:124 , ALA A:126 , GLY A:127 , TYR A:188 , HIS A:249 , FE A:702
BINDING SITE FOR RESIDUE CO3 A 700
2
AC2
SOFTWARE
ASP A:392 , TYR A:425 , THR A:451 , ARG A:455 , THR A:456 , ALA A:457 , GLY A:458 , TYR A:514 , HIS A:582 , FE A:703
BINDING SITE FOR RESIDUE CO3 A 701
3
AC3
SOFTWARE
ASP A:63 , TYR A:95 , TYR A:188 , HIS A:249 , CO3 A:700
BINDING SITE FOR RESIDUE FE A 702
4
AC4
SOFTWARE
ASP A:392 , TYR A:425 , TYR A:514 , HIS A:582 , CO3 A:701
BINDING SITE FOR RESIDUE FE A 703
5
AC5
SOFTWARE
ARG A:124 , GLY A:187 , TYR A:188 , HOH A:803
BINDING SITE FOR RESIDUE CL A 800
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TRFE_RABIT_001 (V498I, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TRFE_RABIT_001
*
V
517
I
TRFE_RABIT
---
---
A
V
498
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 7)
Info
All PROSITE Patterns/Profiles
1: TRANSFERRIN_LIKE_4 (A:6-328|A:342-661)
2: TRANSFERRIN_LIKE_2 (A:188-204|A:514-529)
3: TRANSFERRIN_LIKE_3 (A:222-252|A:555-585)
4: TRANSFERRIN_LIKE_1 (A:425-434)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSFERRIN_LIKE_4
PS51408
Transferrin-like domain profile.
TRFE_RABIT
25-347
361-680
2
A:6-328
A:342-661
2
TRANSFERRIN_LIKE_2
PS00206
Transferrin-like domain signature 2.
TRFE_RABIT
207-223
533-548
2
A:188-204
A:514-529
3
TRANSFERRIN_LIKE_3
PS00207
Transferrin-like domain signature 3.
TRFE_RABIT
241-271
574-604
2
A:222-252
A:555-585
4
TRANSFERRIN_LIKE_1
PS00205
Transferrin-like domain signature 1.
TRFE_RABIT
444-453
1
A:425-434
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1jnfa1 (A:3-334)
1b: SCOP_d1jnfa2 (A:335-676)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Transferrin
(82)
Protein domain
:
Transferrin
(23)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(2)
1a
d1jnfa1
A:3-334
1b
d1jnfa2
A:335-676
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1jnfA02 (A:95-246)
1b: CATH_1jnfA04 (A:425-579)
1c: CATH_1jnfA01 (A:3-94,A:247-336)
1d: CATH_1jnfA03 (A:337-424,A:580-676)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rabbit (Oryctolagus cuniculus)
(2)
1a
1jnfA02
A:95-246
1b
1jnfA04
A:425-579
1c
1jnfA01
A:3-94,A:247-336
1d
1jnfA03
A:337-424,A:580-676
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Transferrin_1jnfA01 (A:342-661)
1b: PFAM_Transferrin_1jnfA02 (A:342-661)
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Clan
:
PBP
(391)
Family
:
Transferrin
(53)
Oryctolagus cuniculus (Rabbit)
(2)
1a
Transferrin-1jnfA01
A:342-661
1b
Transferrin-1jnfA02
A:342-661
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Chain A
Asymmetric Unit 1
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