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1JMT
Asym. Unit
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Asym.Unit (28 KB)
Biol.Unit 1 (24 KB)
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(1)
Title
:
X-RAY STRUCTURE OF A CORE U2AF65/U2AF35 HETERODIMER
Authors
:
C. L. Kielkopf, N. A. Rodionova, M. R. Green, S. K. Burley
Date
:
19 Jul 01 (Deposition) - 19 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rrm, Rna Splicing, Proline, Ppii Helix, Peptide Recognition, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. L. Kielkopf, N. A. Rodionova, M. R. Green, S. K. Burley
A Novel Peptide Recognition Mode Revealed By The X-Ray Structure Of A Core U2Af35/U2Af65 Heterodimer.
Cell(Cambridge, Mass. ) V. 106 595 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: HEXANE-1,6-DIOL (HEZa)
1b: HEXANE-1,6-DIOL (HEZb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEZ
2
Ligand/Ion
HEXANE-1,6-DIOL
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN B:106 , MET B:110 , HOH B:214
BINDING SITE FOR RESIDUE HEZ B 201
2
AC2
SOFTWARE
LYS A:92 , ASP A:129 , ARG A:133 , ASP B:93
BINDING SITE FOR RESIDUE HEZ A 202
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:65-146)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
U2AF1_HUMAN
65-147
1
A:65-146
[
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Exons
(7, 7)
Info
All Exons
Exon 1.2c (A:43-44)
Exon 1.2i (A:45-67 (gaps))
Exon 1.3d (A:67-83)
Exon 1.3e (A:84-116)
Exon 1.3f (A:117-146)
Exon 2.4 (B:90-112)
Exon 2.5 (B:112-112)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2c
2: Boundary 1.2c/1.2i
3: Boundary 1.2i/1.3d
4: Boundary 1.3d/1.3e
5: Boundary 1.3e/1.3f
6: Boundary 1.3f/1.4a
7: Boundary 2.3/2.4
8: Boundary 2.4/2.5
9: Boundary 2.5/2.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000291552
1a
ENSE00001856022
chr21:
44527697-44527561
137
U2AF1_HUMAN
1-15
15
0
-
-
1.2c
ENST00000291552
2c
ENSE00001719187
chr21:
44524512-44524425
88
U2AF1_HUMAN
15-44
30
1
A:43-44
2
1.2i
ENST00000291552
2i
ENSE00001798362
chr21:
44520629-44520563
67
U2AF1_HUMAN
45-67
23
1
A:45-67 (gaps)
23
1.3d
ENST00000291552
3d
ENSE00001717447
chr21:
44515853-44515804
50
U2AF1_HUMAN
67-83
17
1
A:67-83
17
1.3e
ENST00000291552
3e
ENSE00001783248
chr21:
44515646-44515548
99
U2AF1_HUMAN
84-116
33
1
A:84-116
33
1.3f
ENST00000291552
3f
ENSE00001050518
chr21:
44514898-44514765
134
U2AF1_HUMAN
117-161
45
1
A:117-146
30
1.4a
ENST00000291552
4a
ENSE00001268168
chr21:
44514673-44514581
93
U2AF1_HUMAN
161-192
32
0
-
-
1.4e
ENST00000291552
4e
ENSE00001905286
chr21:
44513359-44513066
294
U2AF1_HUMAN
192-240
49
0
-
-
2.1
ENST00000308924
1
ENSE00001247615
chr19:
56165416-56166519
1104
U2AF2_HUMAN
1-17
17
0
-
-
2.2
ENST00000308924
2
ENSE00001172989
chr19:
56170576-56170711
136
U2AF2_HUMAN
17-62
46
0
-
-
2.3
ENST00000308924
3
ENSE00000953888
chr19:
56171543-56171587
45
U2AF2_HUMAN
62-77
16
0
-
-
2.4
ENST00000308924
4
ENSE00001172973
chr19:
56171882-56171985
104
U2AF2_HUMAN
77-112
36
1
B:90-112
23
2.5
ENST00000308924
5
ENSE00001178740
chr19:
56172404-56172555
152
U2AF2_HUMAN
112-162
51
1
B:112-112
1
2.6
ENST00000308924
6
ENSE00001172954
chr19:
56173868-56173984
117
U2AF2_HUMAN
163-201
39
0
-
-
2.7
ENST00000308924
7
ENSE00001172945
chr19:
56174972-56175110
139
U2AF2_HUMAN
202-248
47
0
-
-
2.8
ENST00000308924
8
ENSE00000876731
chr19:
56179873-56179952
80
U2AF2_HUMAN
248-274
27
0
-
-
2.9
ENST00000308924
9
ENSE00001178763
chr19:
56180036-56180158
123
U2AF2_HUMAN
275-315
41
0
-
-
2.10b
ENST00000308924
10b
ENSE00001172923
chr19:
56180449-56180547
99
U2AF2_HUMAN
316-348
33
0
-
-
2.11
ENST00000308924
11
ENSE00001178717
chr19:
56180810-56181058
249
U2AF2_HUMAN
349-431
83
0
-
-
2.12
ENST00000308924
12
ENSE00001320361
chr19:
56185300-56186081
782
U2AF2_HUMAN
432-475
44
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jmta_ (A:)
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Folds
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Splicing factor U2AF subunits
(1)
Protein domain
:
U2AF35 (35 KDa subunit)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1jmta_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1jmtA00 (A:43-146)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1jmtA00
A:43-146
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RRM_5_1jmtA01 (A:91-145)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
RRM
(206)
Family
:
RRM_5
(7)
Homo sapiens (Human)
(3)
1a
RRM_5-1jmtA01
A:91-145
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Asymmetric Unit 1
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