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1JM7
Asym. Unit
Info
Asym.Unit (745 KB)
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Models
(14 )
Title
:
SOLUTION STRUCTURE OF THE BRCA1/BARD1 RING-DOMAIN HETERODIMER
Authors
:
P. S. Brzovic, P. Rajagopal, D. W. Hoyt, M. -C. King, R. E. Klevit
Date
:
17 Jul 01 (Deposition) - 03 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (14 x)
Keywords
:
Brca1, Bard1, Ring Finger, Zinc-Binding Protein, Heterodimer, Ubiquitin Ligase, Antitumor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Brzovic, P. Rajagopal, D. W. Hoyt, M. C. King, R. E. Klevit
Structure Of A Brca1-Bard1 Heterodimeric Ring-Ring Complex.
Nat. Struct. Biol. V. 8 833 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:24 , ILE A:26 , CYS A:27 , CYS A:44 , CYS A:47
BINDING SITE FOR RESIDUE ZN A 123
2
AC2
SOFTWARE
CYS A:39 , HIS A:41 , CYS A:61 , CYS A:64
BINDING SITE FOR RESIDUE ZN A 124
3
AC3
SOFTWARE
CYS B:50 , CYS B:53 , CYS B:71 , CYS B:74
BINDING SITE FOR RESIDUE ZN B 143
4
AC4
SOFTWARE
CYS B:66 , HIS B:68 , CYS B:83 , CYS B:86
BINDING SITE FOR RESIDUE ZN B 144
[
close Site info
]
SAPs(SNPs)/Variants
(15, 15)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_070458 (S4F, chain A, )
02: VAR_020679 (E10K, chain A, )
03: VAR_007754 (V11A, chain A, )
04: VAR_063899 (M18T, chain A, )
05: VAR_007755 (I21V, chain A, )
06: VAR_007756 (L22S, chain A, )
07: VAR_020680 (E23K, chain A, )
08: VAR_035947 (L30F, chain A, )
09: VAR_BRCA1_HUMAN_CCDS11453_1_01 (L30F, chain A, )
10: VAR_070459 (K45Q, chain A, )
11: VAR_007757 (C61G, chain A, )
12: VAR_007758 (C64G, chain A, )
13: VAR_007759 (C64Y, chain A, )
14: VAR_070460 (D67Y, chain A, )
15: VAR_020681 (R71K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070458
S
4
F
BRCA1_HUMAN
Unclassified
---
A
S
4
F
02
UniProt
VAR_020679
E
10
K
BRCA1_HUMAN
Disease (BROVCA1)
---
A
E
10
K
03
UniProt
VAR_007754
V
11
A
BRCA1_HUMAN
Unclassified
80357017
A
V
11
A
04
UniProt
VAR_063899
M
18
T
BRCA1_HUMAN
Unclassified
---
A
M
18
T
05
UniProt
VAR_007755
I
21
V
BRCA1_HUMAN
Unclassified
80357406
A
I
21
V
06
UniProt
VAR_007756
L
22
S
BRCA1_HUMAN
Disease (BC)
---
A
L
22
S
07
UniProt
VAR_020680
E
23
K
BRCA1_HUMAN
Disease (BROVCA1)
---
A
E
23
K
08
UniProt
VAR_035947
L
30
F
BRCA1_HUMAN
Unclassified
---
A
L
30
F
09
CancerSNP
VAR_BRCA1_HUMAN_CCDS11453_1_01
*
L
30
F
BRCA1_HUMAN
Disease (Breast cancer)
---
A
L
30
F
10
UniProt
VAR_070459
K
45
Q
BRCA1_HUMAN
Unclassified
---
A
K
45
Q
11
UniProt
VAR_007757
C
61
G
BRCA1_HUMAN
Disease (OC)
28897672
A
C
61
G
12
UniProt
VAR_007758
C
64
G
BRCA1_HUMAN
Disease (BC)
---
A
C
64
G
13
UniProt
VAR_007759
C
64
Y
BRCA1_HUMAN
Polymorphism
55851803
A
C
64
Y
14
UniProt
VAR_070460
D
67
Y
BRCA1_HUMAN
Unclassified
---
A
D
67
Y
15
UniProt
VAR_020681
R
71
K
BRCA1_HUMAN
Unclassified
---
A
R
71
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ZF_RING_2 (A:24-65,B:50-86)
2: ZF_RING_1 (A:39-48,B:66-75)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_RING_2
PS50089
Zinc finger RING-type profile.
BRCA1_HUMAN
24-65
1
A:24-65
BARD1_HUMAN
50-86
1
B:50-86
2
ZF_RING_1
PS00518
Zinc finger RING-type signature.
BRCA1_HUMAN
39-48
1
A:39-48
BARD1_HUMAN
66-75
1
B:66-75
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.1a (B:26-53)
Exon 1.2a (B:53-72)
Exon 1.3 (B:72-122)
Exon 1.4b (B:122-122)
Exon 2.3 (A:1-27)
Exon 2.4 (A:27-45)
Exon 2.6b (A:45-71)
Exon 2.7a (A:71-101)
Exon 2.8b (A:101-103)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2a
03: Boundary 1.2a/1.3
04: Boundary 1.3/1.4b
05: Boundary 1.4b/1.5
06: Boundary 2.1g/2.3
07: Boundary 2.3/2.4
08: Boundary 2.4/2.6b
09: Boundary 2.6b/2.7a
10: Boundary 2.7a/2.8b
11: Boundary 2.8b/2.9b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000260947
1a
ENSE00002144066
chr2:
215674428-215674136
293
BARD1_HUMAN
1-53
53
1
B:26-53
28
1.2a
ENST00000260947
2a
ENSE00001653146
chr2:
215661841-215661785
57
BARD1_HUMAN
53-72
20
1
B:53-72
20
1.3
ENST00000260947
3
ENSE00001671724
chr2:
215657169-215657021
149
BARD1_HUMAN
72-122
51
1
B:72-122
51
1.4b
ENST00000260947
4b
ENSE00001630355
chr2:
215646233-215645284
950
BARD1_HUMAN
122-438
317
1
B:122-122
1
1.5
ENST00000260947
5
ENSE00001596052
chr2:
215634036-215633956
81
BARD1_HUMAN
439-465
27
0
-
-
1.6
ENST00000260947
6
ENSE00001792455
chr2:
215632378-215632206
173
BARD1_HUMAN
466-523
58
0
-
-
1.7a
ENST00000260947
7a
ENSE00001641114
chr2:
215617279-215617171
109
BARD1_HUMAN
523-559
37
0
-
-
1.8a
ENST00000260947
8a
ENSE00001634739
chr2:
215610578-215610446
133
BARD1_HUMAN
560-604
45
0
-
-
1.9
ENST00000260947
9
ENSE00001780119
chr2:
215609883-215609791
93
BARD1_HUMAN
604-635
32
0
-
-
1.11c
ENST00000260947
11c
ENSE00002150576
chr2:
215595232-215595135
98
BARD1_HUMAN
635-667
33
0
-
-
1.13e
ENST00000260947
13e
ENSE00001814041
chr2:
215593732-215590370
3363
BARD1_HUMAN
668-777
110
0
-
-
2.1g
ENST00000357654
1g
ENSE00001871077
chr17:
41277387-41277288
100
BRCA1_HUMAN
-
0
0
-
-
2.3
ENST00000357654
3
ENSE00002186519
chr17:
41276132-41276034
99
BRCA1_HUMAN
1-27
27
1
A:1-27
27
2.4
ENST00000357654
4
ENSE00001681246
chr17:
41267796-41267743
54
BRCA1_HUMAN
27-45
19
1
A:27-45
19
2.6b
ENST00000357654
6b
ENSE00001682558
chr17:
41258550-41258473
78
BRCA1_HUMAN
45-71
27
1
A:45-71
27
2.7a
ENST00000357654
7a
ENSE00001639754
chr17:
41256973-41256885
89
BRCA1_HUMAN
71-101
31
1
A:71-101
31
2.8b
ENST00000357654
8b
ENSE00001741211
chr17:
41256278-41256139
140
BRCA1_HUMAN
101-147
47
1
A:101-103
3
2.9b
ENST00000357654
9b
ENSE00001734284
chr17:
41251897-41251792
106
BRCA1_HUMAN
148-183
36
0
-
-
2.10
ENST00000357654
10
ENSE00001677807
chr17:
41249306-41249261
46
BRCA1_HUMAN
183-198
16
0
-
-
2.11
ENST00000357654
11
ENSE00002148837
chr17:
41247939-41247863
77
BRCA1_HUMAN
198-224
27
0
-
-
2.12f
ENST00000357654
12f
ENSE00001646430
chr17:
41246877-41243452
3426
BRCA1_HUMAN
224-1366
1143
0
-
-
2.13
ENST00000357654
13
ENSE00000729436
chr17:
41243049-41242961
89
BRCA1_HUMAN
1366-1395
30
0
-
-
2.14
ENST00000357654
14
ENSE00000371140
chr17:
41234592-41234421
172
BRCA1_HUMAN
1396-1453
58
0
-
-
2.16a
ENST00000357654
16a
ENSE00002181963
chr17:
41228631-41228505
127
BRCA1_HUMAN
1453-1495
43
0
-
-
2.17
ENST00000357654
17
ENSE00000865524
chr17:
41226538-41226348
191
BRCA1_HUMAN
1495-1559
65
0
-
-
2.18a
ENST00000357654
18a
ENSE00000865521
chr17:
41223255-41222945
311
BRCA1_HUMAN
1559-1662
104
0
-
-
2.19a
ENST00000357654
19a
ENSE00000865520
chr17:
41219712-41219625
88
BRCA1_HUMAN
1663-1692
30
0
-
-
2.20
ENST00000357654
20
ENSE00001368002
chr17:
41215968-41215891
78
BRCA1_HUMAN
1692-1718
27
0
-
-
2.21c
ENST00000357654
21c
ENSE00001383927
chr17:
41215390-41215350
41
BRCA1_HUMAN
1718-1731
14
0
-
-
2.22
ENST00000357654
22
ENSE00001383775
chr17:
41209152-41209069
84
BRCA1_HUMAN
1732-1759
28
0
-
-
2.23
ENST00000357654
23
ENSE00000865503
chr17:
41203134-41203080
55
BRCA1_HUMAN
1760-1778
19
0
-
-
2.24
ENST00000357654
24
ENSE00000865496
chr17:
41201211-41201138
74
BRCA1_HUMAN
1778-1802
25
0
-
-
2.25
ENST00000357654
25
ENSE00000865492
chr17:
41199720-41199660
61
BRCA1_HUMAN
1803-1823
21
0
-
-
2.26e
ENST00000357654
26e
ENSE00001814242
chr17:
41197819-41196312
1508
BRCA1_HUMAN
1823-1863
41
0
-
-
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1jm7b_ (B:)
2a: SCOP_d1jm7a_ (A:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
RING/U-box
(48)
Superfamily
:
RING/U-box
(48)
Family
:
RING finger domain, C3HC4
(23)
Protein domain
:
bard1 RING domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1jm7b_
B:
Protein domain
:
brca1 RING domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1jm7a_
A:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1jm7B00 (B:26-122)
1b: CATH_1jm7A00 (A:1-103)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Herpes Virus-1
(49)
Homologous Superfamily
:
Zinc/RING finger domain, C3HC4 (zinc finger)
(47)
Human (Homo sapiens)
(26)
1a
1jm7B00
B:26-122
1b
1jm7A00
A:1-103
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_C3HC4_1jm7A01 (A:24-64)
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(
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(
)
Clan
:
RING
(39)
Family
:
zf-C3HC4
(4)
Homo sapiens (Human)
(3)
1a
zf-C3HC4-1jm7A01
A:24-64
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