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1JLX
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
AGGLUTININ IN COMPLEX WITH T-DISACCHARIDE
Authors
:
T. R. Transue, A. K. Smith, H. Mo, I. J. Goldstein, M. A. Saper
Date
:
23 Jul 97 (Deposition) - 03 Dec 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Complex (Lectin/Saccharide), T-Disaccharide Homodimer, Bivalent, Lectin
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. R. Transue, A. K. Smith, H. Mo, I. J. Goldstein, M. A. Saper
Structure Of Benzyl T-Antigen Disaccharide Bound To Amaranthus Caudatus Agglutinin.
Nat. Struct. Biol. V. 4 779 1997
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
2a: FORMYL GROUP (FORa)
2b: FORMYL GROUP (FORb)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: TOLUENE (MBNa)
4b: TOLUENE (MBNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
A2G
2
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
FOR
2
Mod. Residue
FORMYL GROUP
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
MBN
2
Ligand/Ion
TOLUENE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: S1 (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:74 , HIS A:75 , A2G A:305 , HOH A:454 , GLN B:262 , LYS B:263 , HOH B:374 , HOH B:432
BINDING SITE FOR RESIDUE GAL A 304
2
AC2
SOFTWARE
ASN A:74 , HIS A:75 , TYR A:76 , TRP A:77 , PHE A:130 , PHE A:135 , GAL A:304 , MBN A:306 , HOH A:450 , HOH B:432
BINDING SITE FOR RESIDUE A2G A 305
3
AC3
SOFTWARE
GLN A:262 , ASN B:74 , HIS B:75 , A2G B:305 , HOH B:435 , HOH B:439
BINDING SITE FOR RESIDUE GAL B 304
4
AC4
SOFTWARE
ASN B:74 , HIS B:75 , TYR B:76 , TRP B:77 , PHE B:130 , PHE B:135 , GAL B:304 , MBN B:306 , HOH B:436
BINDING SITE FOR RESIDUE A2G B 305
5
AC5
SOFTWARE
ALA A:1 , GLY A:2 , LEU A:3 , VAL A:57
BINDING SITE FOR RESIDUE FOR A 0
6
AC6
SOFTWARE
ALA B:1 , GLY B:2 , LEU B:3 , VAL B:57
BINDING SITE FOR RESIDUE FOR B 0
7
AC7
SOFTWARE
TYR A:124 , PHE A:135 , A2G A:305
BINDING SITE FOR RESIDUE MBN A 306
8
AC8
SOFTWARE
TYR B:124 , A2G B:305
BINDING SITE FOR RESIDUE MBN B 306
9
S1
UNKNOWN
ASN A:74 , HIS A:75 , TYR A:76 , TRP A:77 , TYR A:124 , VAL A:126 , PHE A:130 , PHE A:135 , MET A:261 , GLN A:262 , LYS A:263 , THR A:264
CARBOHYDRATE BINDING SITE.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1jlxa1 (A:1-153)
1b: SCOP_d1jlxa2 (A:154-299)
1c: SCOP_d1jlxb1 (B:1-153)
1d: SCOP_d1jlxb2 (B:154-299)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Agglutinin
(2)
Family
:
Agglutinin
(2)
Protein domain
:
Agglutinin
(2)
Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]
(2)
1a
d1jlxa1
A:1-153
1b
d1jlxa2
A:154-299
1c
d1jlxb1
B:1-153
1d
d1jlxb2
B:154-299
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1jlxA02 (A:160-299)
1b: CATH_1jlxB02 (B:160-299)
1c: CATH_1jlxA01 (A:1-159)
1d: CATH_1jlxB01 (B:1-159)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Amaranth (Amaranthus caudatus)
(2)
1a
1jlxA02
A:160-299
1b
1jlxB02
B:160-299
1c
1jlxA01
A:1-159
1d
1jlxB01
B:1-159
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Agglutinin_1jlxB01 (B:158-298)
1b: PFAM_Agglutinin_1jlxB02 (B:158-298)
1c: PFAM_Agglutinin_1jlxB03 (B:158-298)
1d: PFAM_Agglutinin_1jlxB04 (B:158-298)
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Clan
:
Trefoil
(131)
Family
:
Agglutinin
(2)
Amaranthus caudatus (Love-lies-bleeding) (Inca-wheat)
(2)
1a
Agglutinin-1jlxB01
B:158-298
1b
Agglutinin-1jlxB02
B:158-298
1c
Agglutinin-1jlxB03
B:158-298
1d
Agglutinin-1jlxB04
B:158-298
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Asymmetric Unit 1
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Asym.Unit (112 KB)
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