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1JKV
Asym. Unit
Info
Asym.Unit (573 KB)
Biol.Unit 1 (564 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MANGANESE CATALASE FROM LACTOBACILLUS PLANTARUM COMPLEXED WITH AZIDE
Authors
:
V. V. Barynin, M. M. Whittaker, S. V. Antonyuk, V. S. Lamzin, P. M. Harris P. J. Artymiuk, J. W. Whittaker
Date
:
13 Jul 01 (Deposition) - 13 Jul 02 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.39
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Hexamer, Catalase Dimanganese, Metalloenzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. V. Barynin, M. M. Whittaker, S. V. Antonyuk, V. S. Lamzin, P. M. Harrison, P. J. Artymiuk, J. W. Whittaker
Crystal Structure Of Manganese Catalase From Lactobacillus Plantarum.
Structure V. 9 725 2001
[
close entry info
]
Hetero Components
(5, 57)
Info
All Hetero Components
1a: AZIDE ION (AZIa)
1b: AZIDE ION (AZIb)
1c: AZIDE ION (AZIc)
1d: AZIDE ION (AZId)
1e: AZIDE ION (AZIe)
1f: AZIDE ION (AZIf)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
4a: MANGANESE (III) ION (MN3a)
4b: MANGANESE (III) ION (MN3b)
4c: MANGANESE (III) ION (MN3c)
4d: MANGANESE (III) ION (MN3d)
4e: MANGANESE (III) ION (MN3e)
4f: MANGANESE (III) ION (MN3f)
4g: MANGANESE (III) ION (MN3g)
4h: MANGANESE (III) ION (MN3h)
4i: MANGANESE (III) ION (MN3i)
4j: MANGANESE (III) ION (MN3j)
4k: MANGANESE (III) ION (MN3k)
4l: MANGANESE (III) ION (MN3l)
5a: HYDROXIDE ION (OHa)
5b: HYDROXIDE ION (OHb)
5c: HYDROXIDE ION (OHc)
5d: HYDROXIDE ION (OHd)
5e: HYDROXIDE ION (OHe)
5f: HYDROXIDE ION (OHf)
5g: HYDROXIDE ION (OHg)
5h: HYDROXIDE ION (OHh)
5i: HYDROXIDE ION (OHi)
5j: HYDROXIDE ION (OHj)
5k: HYDROXIDE ION (OHk)
5l: HYDROXIDE ION (OHl)
5m: HYDROXIDE ION (OHm)
5n: HYDROXIDE ION (OHn)
5o: HYDROXIDE ION (OHo)
5p: HYDROXIDE ION (OHp)
5q: HYDROXIDE ION (OHq)
5r: HYDROXIDE ION (OHr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZI
6
Ligand/Ion
AZIDE ION
2
CA
6
Ligand/Ion
CALCIUM ION
3
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
4
MN3
12
Ligand/Ion
MANGANESE (III) ION
5
OH
18
Ligand/Ion
HYDROXIDE ION
[
close Hetero Component info
]
Sites
(57, 57)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:57 , ASP A:61 , ASN F:218 , SER F:220 , GLY F:222 , HOH F:9361
BINDING SITE FOR RESIDUE CA A 4272
02
AC2
SOFTWARE
ASP B:57 , ASP B:61 , ASN C:218 , SER C:220 , GLY C:222 , HOH C:6343
BINDING SITE FOR RESIDUE CA B 5272
03
AC3
SOFTWARE
ASN B:218 , SER B:220 , GLY B:222 , HOH B:9400 , ASP C:57 , ASP C:61
BINDING SITE FOR RESIDUE CA C 6272
04
AC4
SOFTWARE
ASP D:57 , ASP D:61 , ASN E:218 , SER E:220 , GLY E:222 , HOH E:8380
BINDING SITE FOR RESIDUE CA D 7272
05
AC5
SOFTWARE
ASN D:218 , SER D:220 , GLY D:222 , HOH D:7389 , ASP E:57 , ASP E:61
BINDING SITE FOR RESIDUE CA E 8272
06
AC6
SOFTWARE
ASN A:218 , SER A:220 , GLY A:222 , HOH A:5396 , ASP F:57 , ASP F:61
BINDING SITE FOR RESIDUE CA F 9272
07
AC7
SOFTWARE
GLU A:66 , HIS A:69 , HIS A:181 , MN3 A:4267 , MN3 A:4268 , OH A:4270 , OH A:4271 , AZI A:4281
BINDING SITE FOR RESIDUE OH A 4269
08
AC8
SOFTWARE
GLU A:35 , GLU A:66 , ARG A:147 , GLU A:148 , MN3 A:4267 , MN3 A:4268 , OH A:4269 , OH A:4271 , AZI A:4281
BINDING SITE FOR RESIDUE OH A 4270
09
AC9
SOFTWARE
GLU A:35 , HIS A:69 , LEU A:174 , GLU A:178 , MN3 A:4267 , OH A:4269 , OH A:4270 , AZI A:4281
BINDING SITE FOR RESIDUE OH A 4271
10
BC1
SOFTWARE
GLU B:66 , HIS B:69 , HIS B:181 , MN3 B:5267 , MN3 B:5268 , OH B:5270 , OH B:5271 , AZI B:5281
BINDING SITE FOR RESIDUE OH B 5269
11
BC2
SOFTWARE
GLU B:35 , GLU B:66 , ARG B:147 , GLU B:148 , GLU B:178 , MN3 B:5267 , MN3 B:5268 , OH B:5269 , OH B:5271 , AZI B:5281
BINDING SITE FOR RESIDUE OH B 5270
12
BC3
SOFTWARE
GLU B:35 , HIS B:69 , LEU B:174 , GLU B:178 , MN3 B:5267 , OH B:5269 , OH B:5270 , AZI B:5281
BINDING SITE FOR RESIDUE OH B 5271
13
BC4
SOFTWARE
GLU C:66 , HIS C:69 , HIS C:181 , MN3 C:6267 , MN3 C:6268 , OH C:6270 , OH C:6271 , AZI C:6281
BINDING SITE FOR RESIDUE OH C 6269
14
BC5
SOFTWARE
GLU C:35 , GLU C:66 , ARG C:147 , GLU C:148 , GLU C:178 , MN3 C:6267 , MN3 C:6268 , OH C:6269 , OH C:6271 , AZI C:6281
BINDING SITE FOR RESIDUE OH C 6270
15
BC6
SOFTWARE
GLU C:35 , HIS C:69 , GLU C:178 , MN3 C:6267 , OH C:6269 , OH C:6270 , AZI C:6281
BINDING SITE FOR RESIDUE OH C 6271
16
BC7
SOFTWARE
GLU D:66 , HIS D:69 , HIS D:181 , MN3 D:7267 , MN3 D:7268 , OH D:7270 , OH D:7271 , AZI D:7281
BINDING SITE FOR RESIDUE OH D 7269
17
BC8
SOFTWARE
GLU D:35 , GLU D:66 , ARG D:147 , GLU D:148 , GLU D:178 , MN3 D:7267 , MN3 D:7268 , OH D:7269 , OH D:7271 , AZI D:7281
BINDING SITE FOR RESIDUE OH D 7270
18
BC9
SOFTWARE
GLU D:35 , HIS D:69 , LEU D:174 , GLU D:178 , MN3 D:7267 , OH D:7269 , OH D:7270 , AZI D:7281
BINDING SITE FOR RESIDUE OH D 7271
19
CC1
SOFTWARE
GLU E:66 , HIS E:69 , HIS E:181 , MN3 E:8267 , MN3 E:8268 , OH E:8270 , OH E:8271 , AZI E:8281
BINDING SITE FOR RESIDUE OH E 8269
20
CC2
SOFTWARE
GLU E:35 , GLU E:66 , ARG E:147 , GLU E:148 , MN3 E:8267 , MN3 E:8268 , OH E:8269 , OH E:8271 , AZI E:8281
BINDING SITE FOR RESIDUE OH E 8270
21
CC3
SOFTWARE
GLU E:35 , HIS E:69 , LEU E:174 , GLU E:178 , MN3 E:8267 , OH E:8269 , OH E:8270 , AZI E:8281
BINDING SITE FOR RESIDUE OH E 8271
22
CC4
SOFTWARE
GLU F:66 , HIS F:69 , HIS F:181 , MN3 F:9267 , MN3 F:9268 , OH F:9270 , OH F:9271 , AZI F:9281
BINDING SITE FOR RESIDUE OH F 9269
23
CC5
SOFTWARE
GLU F:35 , GLU F:66 , ARG F:147 , GLU F:148 , MN3 F:9267 , MN3 F:9268 , OH F:9269 , OH F:9271 , AZI F:9281
BINDING SITE FOR RESIDUE OH F 9270
24
CC6
SOFTWARE
GLU F:35 , HIS F:69 , LEU F:174 , GLU F:178 , MN3 F:9267 , OH F:9269 , OH F:9270 , AZI F:9281
BINDING SITE FOR RESIDUE OH F 9271
25
CC7
SOFTWARE
GLU A:35 , HIS A:69 , LEU A:174 , GLU A:178 , MN3 A:4267 , OH A:4269 , OH A:4270 , OH A:4271 , HOH A:5459
BINDING SITE FOR RESIDUE AZI A 4281
26
CC8
SOFTWARE
GLU B:35 , HIS B:69 , LEU B:174 , GLU B:178 , MN3 B:5267 , OH B:5269 , OH B:5270 , OH B:5271 , HOH B:9467
BINDING SITE FOR RESIDUE AZI B 5281
27
CC9
SOFTWARE
GLU C:35 , HIS C:69 , LEU C:174 , GLU C:178 , MN3 C:6267 , OH C:6269 , OH C:6270 , OH C:6271
BINDING SITE FOR RESIDUE AZI C 6281
28
DC1
SOFTWARE
GLU D:35 , HIS D:69 , LEU D:174 , GLU D:178 , MN3 D:7267 , OH D:7269 , OH D:7270 , OH D:7271
BINDING SITE FOR RESIDUE AZI D 7281
29
DC2
SOFTWARE
GLU E:35 , HIS E:69 , LEU E:174 , GLU E:178 , MN3 E:8267 , OH E:8269 , OH E:8270 , OH E:8271 , HOH E:8477
BINDING SITE FOR RESIDUE AZI E 8281
30
DC3
SOFTWARE
GLU F:35 , HIS F:69 , LEU F:174 , GLU F:178 , MN3 F:9267 , OH F:9269 , OH F:9270 , OH F:9271
BINDING SITE FOR RESIDUE AZI F 9281
31
DC4
SOFTWARE
GLU A:35 , GLU A:66 , HIS A:69 , MN3 A:4268 , OH A:4269 , OH A:4270 , OH A:4271 , AZI A:4281
BINDING SITE FOR RESIDUE MN3 A 4267
32
DC5
SOFTWARE
GLU A:66 , ARG A:147 , GLU A:148 , HIS A:181 , MN3 A:4267 , OH A:4269 , OH A:4270
BINDING SITE FOR RESIDUE MN3 A 4268
33
DC6
SOFTWARE
GLU B:35 , GLU B:66 , HIS B:69 , MN3 B:5268 , OH B:5269 , OH B:5270 , OH B:5271 , AZI B:5281
BINDING SITE FOR RESIDUE MN3 B 5267
34
DC7
SOFTWARE
GLU B:66 , ARG B:147 , GLU B:148 , HIS B:181 , MN3 B:5267 , OH B:5269 , OH B:5270
BINDING SITE FOR RESIDUE MN3 B 5268
35
DC8
SOFTWARE
GLU C:35 , GLU C:66 , HIS C:69 , MN3 C:6268 , OH C:6269 , OH C:6270 , OH C:6271 , AZI C:6281
BINDING SITE FOR RESIDUE MN3 C 6267
36
DC9
SOFTWARE
GLU C:66 , ARG C:147 , GLU C:148 , HIS C:181 , MN3 C:6267 , OH C:6269 , OH C:6270
BINDING SITE FOR RESIDUE MN3 C 6268
37
EC1
SOFTWARE
GLU D:35 , GLU D:66 , HIS D:69 , MN3 D:7268 , OH D:7269 , OH D:7270 , OH D:7271 , AZI D:7281
BINDING SITE FOR RESIDUE MN3 D 7267
38
EC2
SOFTWARE
GLU D:66 , ARG D:147 , GLU D:148 , HIS D:181 , MN3 D:7267 , OH D:7269 , OH D:7270
BINDING SITE FOR RESIDUE MN3 D 7268
39
EC3
SOFTWARE
GLU E:35 , GLU E:66 , HIS E:69 , MN3 E:8268 , OH E:8269 , OH E:8270 , OH E:8271 , AZI E:8281
BINDING SITE FOR RESIDUE MN3 E 8267
40
EC4
SOFTWARE
GLU E:66 , ARG E:147 , GLU E:148 , HIS E:181 , MN3 E:8267 , OH E:8269 , OH E:8270
BINDING SITE FOR RESIDUE MN3 E 8268
41
EC5
SOFTWARE
GLU F:35 , GLU F:66 , HIS F:69 , MN3 F:9268 , OH F:9269 , OH F:9270 , OH F:9271 , AZI F:9281
BINDING SITE FOR RESIDUE MN3 F 9267
42
EC6
SOFTWARE
GLU F:66 , ARG F:147 , GLU F:148 , HIS F:181 , MN3 F:9267 , OH F:9269 , OH F:9270
BINDING SITE FOR RESIDUE MN3 F 9268
43
EC7
SOFTWARE
SER A:74 , THR A:75 , GLY A:78 , ASN A:115 , ALA A:116 , HOH A:5299 , TRP B:47 , ILE F:254
BINDING SITE FOR RESIDUE EDO A 4283
44
EC8
SOFTWARE
SER A:74 , SER A:117 , LEU A:118 , HOH A:5359 , SER B:44 , HOH B:9440
BINDING SITE FOR RESIDUE EDO A 4284
45
EC9
SOFTWARE
VAL A:145 , GLN A:189 , HOH A:5392 , ARG F:142 , VAL F:145 , GLN F:189
BINDING SITE FOR RESIDUE EDO F 4285
46
FC1
SOFTWARE
TRP A:47 , SER B:74 , THR B:75 , GLY B:78 , ASN B:115 , ALA B:116 , HOH B:9297 , ILE C:254
BINDING SITE FOR RESIDUE EDO B 5283
47
FC2
SOFTWARE
SER A:44 , HOH A:5319 , HOH A:5426 , SER B:74 , SER B:117
BINDING SITE FOR RESIDUE EDO A 5284
48
FC3
SOFTWARE
ILE B:254 , SER C:74 , THR C:75 , GLY C:78 , ASN C:115 , ALA C:116 , HOH C:6323 , TRP E:47
BINDING SITE FOR RESIDUE EDO C 6283
49
FC4
SOFTWARE
SER C:74 , ALA C:116 , SER C:117 , LEU C:118 , HOH C:6393 , HOH C:6462 , SER E:44
BINDING SITE FOR RESIDUE EDO C 6284
50
FC5
SOFTWARE
GLN B:189 , GLN C:189
BINDING SITE FOR RESIDUE EDO C 6285
51
FC6
SOFTWARE
SER D:74 , THR D:75 , GLY D:78 , ASN D:115 , ALA D:116 , HOH D:7305 , TRP F:47
BINDING SITE FOR RESIDUE EDO D 7283
52
FC7
SOFTWARE
SER D:74 , ALA D:116 , SER D:117 , HOH D:7348 , HOH D:7429 , SER F:44
BINDING SITE FOR RESIDUE EDO D 7284
53
FC8
SOFTWARE
ARG D:142 , VAL D:145 , GLN D:189 , ARG E:142 , GLN E:189 , HOH E:8414
BINDING SITE FOR RESIDUE EDO E 7285
54
FC9
SOFTWARE
TRP C:47 , ILE D:254 , SER E:74 , THR E:75 , GLY E:78 , ASN E:115 , ALA E:116 , HOH E:8301
BINDING SITE FOR RESIDUE EDO E 8283
55
GC1
SOFTWARE
SER C:44 , TRP C:47 , HOH C:6447 , SER E:74 , SER E:117 , HOH E:8349
BINDING SITE FOR RESIDUE EDO E 8284
56
GC2
SOFTWARE
ILE A:254 , TRP D:47 , SER F:74 , THR F:75 , GLY F:78 , ASN F:115 , ALA F:116 , HOH F:9311
BINDING SITE FOR RESIDUE EDO F 9283
57
GC3
SOFTWARE
SER D:44 , HOH D:7432 , SER F:74 , ALA F:116 , SER F:117 , LEU F:118 , HOH F:9349
BINDING SITE FOR RESIDUE EDO F 9284
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1jkva_ (A:)
1b: SCOP_d1jkve_ (E:)
1c: SCOP_d1jkvf_ (F:)
1d: SCOP_d1jkvb_ (B:)
1e: SCOP_d1jkvc_ (C:)
1f: SCOP_d1jkvd_ (D:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Manganese catalase (T-catalase)
(7)
Protein domain
:
Manganese catalase (T-catalase)
(4)
Lactobacillus plantarum [TaxId: 1590]
(3)
1a
d1jkva_
A:
1b
d1jkve_
E:
1c
d1jkvf_
F:
1d
d1jkvb_
B:
1e
d1jkvc_
C:
1f
d1jkvd_
D:
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1jkvB02 (B:204-266)
1b: CATH_1jkvC02 (C:204-266)
1c: CATH_1jkvD02 (D:204-266)
1d: CATH_1jkvE02 (E:204-266)
1e: CATH_1jkvF02 (F:204-266)
1f: CATH_1jkvA02 (A:198-266)
2a: CATH_1jkvA01 (A:1-197)
2b: CATH_1jkvB01 (B:1-203)
2c: CATH_1jkvC01 (C:1-203)
2d: CATH_1jkvD01 (D:1-203)
2e: CATH_1jkvE01 (E:1-203)
2f: CATH_1jkvF01 (F:1-203)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
manganese catalase, domain 2, chain A
(3)
Homologous Superfamily
:
manganese catalase, domain 2, chain A
(3)
Lactobacillus plantarum. Organism_taxid: 1590. Strain: atcc 14431.
(2)
1a
1jkvB02
B:204-266
1b
1jkvC02
C:204-266
1c
1jkvD02
D:204-266
1d
1jkvE02
E:204-266
1e
1jkvF02
F:204-266
1f
1jkvA02
A:198-266
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Lactobacillus plantarum. Organism_taxid: 1590. Strain: atcc 14431.
(2)
2a
1jkvA01
A:1-197
2b
1jkvB01
B:1-203
2c
1jkvC01
C:1-203
2d
1jkvD01
D:1-203
2e
1jkvE01
E:1-203
2f
1jkvF01
F:1-203
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
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Asym.Unit (573 KB)
Header - Asym.Unit
Biol.Unit 1 (564 KB)
Header - Biol.Unit 1
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