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1JKE
Biol. Unit 3
Info
Asym.Unit (106 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (52 KB)
Biol.Unit 3 (197 KB)
Biol.Unit 4 (100 KB)
Biol.Unit 5 (100 KB)
Biol.Unit 6 (51 KB)
Biol.Unit 7 (52 KB)
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(1)
Title
:
D-TYR TRNATYR DEACYLASE FROM ESCHERICHIA COLI
Authors
:
M. L. Ferri-Fioni, E. Schmitt, J. Soutourina, P. Plateau, Y. Mechulam, S. Blanquet
Date
:
12 Jul 01 (Deposition) - 25 Jan 02 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: A,B,C,D (2x)
Biol. Unit 4: A,B,C,D (1x)
Biol. Unit 5: A,B,C,D (1x)
Biol. Unit 6: A,C (1x)
Biol. Unit 7: B,D (1x)
Keywords
:
Beta-Alpha-Barrel, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. L. Ferri-Fioni, E. Schmitt, J. Soutourina, P. Plateau, Y. Mechulam S. Blanquet
Structure Of Crystalline D-Tyr-Trna(Tyr) Deacylase. A Representative Of A New Class Of Trna-Dependent Hydrolases.
J. Biol. Chem. V. 276 47285 2001
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:107 , GLU B:111 , ASP C:100 , GLU D:18
BINDING SITE FOR RESIDUE ZN D 901
02
AC2
SOFTWARE
GLU B:18 , GLU D:103 , ASP D:107 , HOH D:1087 , HOH D:1088
BINDING SITE FOR RESIDUE ZN D 902
03
AC3
SOFTWARE
GLU B:22 , HOH B:1020 , HOH B:1021 , GLU D:111 , HOH D:1270
BINDING SITE FOR RESIDUE ZN D 903
04
AC4
SOFTWARE
ASP D:100 , HOH D:1103 , HOH D:1376
BINDING SITE FOR RESIDUE ZN D 904
05
AC5
SOFTWARE
GLU A:18 , HOH A:1134 , GLU C:103 , ASP C:107
BINDING SITE FOR RESIDUE ZN C 905
06
AC6
SOFTWARE
GLU A:16 , HOH A:1325 , GLU B:47
BINDING SITE FOR RESIDUE ZN A 906
07
AC7
SOFTWARE
ASP B:128 , ASP D:36 , HOH D:1184 , HOH D:1189
BINDING SITE FOR RESIDUE ZN D 907
08
AC8
SOFTWARE
GLU A:111 , HOH A:1234 , GLU C:22 , HOH C:1230 , HOH C:1350 , HOH C:1353
BINDING SITE FOR RESIDUE ZN A 908
09
AC9
SOFTWARE
GLU A:103 , ASP A:107 , GLU C:18 , HOH C:1404 , HOH C:1416
BINDING SITE FOR RESIDUE ZN A 909
10
BC1
SOFTWARE
GLU C:117 , HOH C:1308 , HOH C:1316 , HOH C:1414 , HOH C:1415
BINDING SITE FOR RESIDUE ZN C 910
11
BC2
SOFTWARE
LYS C:41 , HOH C:1044 , HOH C:1105 , HOH C:1118 , HOH C:1288 , HOH C:1378 , HOH C:1380
BINDING SITE FOR RESIDUE ZN C 911
12
BC3
SOFTWARE
HOH B:1254 , HOH B:1370 , HOH B:1413 , HOH B:1417 , HOH B:1418 , HOH B:1419
BINDING SITE FOR RESIDUE ZN B 912
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1jkea_ (A:)
1b: SCOP_d1jkeb_ (B:)
1c: SCOP_d1jkec_ (C:)
1d: SCOP_d1jked_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DTD-like
(18)
Superfamily
:
DTD-like
(18)
Family
:
DTD-like
(3)
Protein domain
:
D-Tyr tRNAtyr deacylase, DTD
(2)
Escherichia coli [TaxId: 562]
(1)
1a
d1jkea_
A:
1b
d1jkeb_
B:
1c
d1jkec_
C:
1d
d1jked_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1jkeA00 (A:1-145)
1b: CATH_1jkeB00 (B:1-145)
1c: CATH_1jkeC00 (C:1-145)
1d: CATH_1jkeD00 (D:1-145)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
D-tyrosyl-trna(Tyr) Deacylase; Chain: A;
(15)
Homologous Superfamily
:
[code=3.50.80.10, no name defined]
(15)
Escherichia coli. Organism_taxid: 562.
(1)
1a
1jkeA00
A:1-145
1b
1jkeB00
B:1-145
1c
1jkeC00
C:1-145
1d
1jkeD00
D:1-145
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Tyr_Deacylase_1jkeD01 (D:2-145)
1b: PFAM_Tyr_Deacylase_1jkeD02 (D:2-145)
1c: PFAM_Tyr_Deacylase_1jkeD03 (D:2-145)
1d: PFAM_Tyr_Deacylase_1jkeD04 (D:2-145)
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Clan
:
no clan defined [family: Tyr_Deacylase]
(12)
Family
:
Tyr_Deacylase
(12)
Escherichia coli (strain K12)
(1)
1a
Tyr_Deacylase-1jkeD01
D:2-145
1b
Tyr_Deacylase-1jkeD02
D:2-145
1c
Tyr_Deacylase-1jkeD03
D:2-145
1d
Tyr_Deacylase-1jkeD04
D:2-145
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Show PDB file:
Asym.Unit (106 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
Biol.Unit 3 (197 KB)
Header - Biol.Unit 3
Biol.Unit 4 (100 KB)
Header - Biol.Unit 4
Biol.Unit 5 (100 KB)
Header - Biol.Unit 5
Biol.Unit 6 (51 KB)
Header - Biol.Unit 6
Biol.Unit 7 (52 KB)
Header - Biol.Unit 7
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