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1JK9
Biol. Unit 1
Info
Asym.Unit (128 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (63 KB)
Biol.Unit 3 (123 KB)
Biol.Unit 4 (122 KB)
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(1)
Title
:
HETERODIMER BETWEEN H48F-YSOD1 AND YCCS
Authors
:
A. L. Lamb, A. S. Torres, T. V. O'Halloran, A. C. Rosenzweig
Date
:
11 Jul 01 (Deposition) - 05 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Protein-Protein Complex, Heterodimer, Metallochaperone, Chaperone, Copper, Amyotrophic Lateral Sclerosis, Lou Gehrig'S Disease, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. L. Lamb, A. S. Torres, T. V. O'Halloran, A. C. Rosenzweig
Heterodimeric Structure Of Superoxide Dismutase In Complex With Its Metallochaperone.
Nat. Struct. Biol. V. 8 751 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
1
Ligand/Ion
SULFATE ION
2
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:63 , HIS A:71 , HIS A:80 , ASP A:83
BINDING SITE FOR RESIDUE ZN A 301
2
AC3
SOFTWARE
HIS B:16 , GLU C:42 , HIS D:198 , GLU D:200
BINDING SITE FOR RESIDUE ZN B 303
3
AC4
SOFTWARE
GLU A:42 , HIS B:198 , GLU B:200 , HIS D:16
BINDING SITE FOR RESIDUE ZN D 304
4
AC5
SOFTWARE
PHE A:48 , HIS A:120 , ARG A:143 , LYS B:226 , CYS B:229 , ALA B:230
BINDING SITE FOR RESIDUE SO4 A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: HMA_2 (B:15-70)
2: SOD_CU_ZN_1 (A:44-54)
3: SOD_CU_ZN_2 (A:138-149)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HMA_2
PS50846
Heavy-metal-associated domain profile.
CCS1_YEAST
15-70
1
B:15-70
-
2
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_YEAST
45-55
1
A:44-54
-
3
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_YEAST
139-150
1
A:138-149
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1jk9b1 (B:74-245)
1b: SCOP_d1jk9d1 (D:74-245)
2a: SCOP_d1jk9a_ (A:)
2b: SCOP_d1jk9c_ (C:)
3a: SCOP_d1jk9b2 (B:3-73)
3b: SCOP_d1jk9d2 (D:3-73)
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Copper chaperone for superoxide dismutase, C-terminal domain
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1jk9b1
B:74-245
1b
d1jk9d1
D:74-245
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(12)
2a
d1jk9a_
A:
2b
d1jk9c_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
HMA, heavy metal-associated domain
(79)
Family
:
HMA, heavy metal-associated domain
(59)
Protein domain
:
Copper chaperone for superoxide dismutase, N-terminal domain
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
3a
d1jk9b2
B:3-73
3b
d1jk9d2
D:3-73
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1jk9B01 (B:3-73)
1b: CATH_1jk9D01 (D:3-73)
2a: CATH_1jk9A00 (A:1-153)
2b: CATH_1jk9C00 (C:1-153)
2c: CATH_1jk9B02 (B:74-220)
2d: CATH_1jk9D02 (D:74-220)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.100, no name defined]
(82)
Baker's yeast (Saccharomyces cerevisiae)
(10)
1a
1jk9B01
B:3-73
1b
1jk9D01
D:3-73
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.200, no name defined]
(125)
Baker's yeast (Saccharomyces cerevisiae)
(13)
2a
1jk9A00
A:1-153
2b
1jk9C00
C:1-153
2c
1jk9B02
B:74-220
2d
1jk9D02
D:74-220
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (128 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
Biol.Unit 3 (123 KB)
Header - Biol.Unit 3
Biol.Unit 4 (122 KB)
Header - Biol.Unit 4
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