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1JJ7
Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL ATPASE DOMAIN OF HUMAN TAP1
Authors
:
R. Gaudet, D. C. Wiley
Date
:
03 Jul 01 (Deposition) - 12 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
P-Loop, Abc Atpase Domain, Helical Domain, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Gaudet, D. C. Wiley
Structure Of The Abc Atpase Domain Of Human Tap1, The Transporter Associated With Antigen Processing.
Embo J. V. 20 4964 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:36 , HOH A:40 , HOH A:46 , HOH A:61 , SER A:545 , ADP A:752
BINDING SITE FOR RESIDUE MG A 902
2
AC2
SOFTWARE
HOH A:4 , HOH A:7 , HOH A:13 , HOH A:19 , HOH A:33 , HOH A:36 , HOH A:40 , HOH A:46 , HOH A:62 , HOH A:82 , HOH A:103 , TYR A:512 , ARG A:515 , VAL A:520 , PRO A:539 , ASN A:540 , GLY A:541 , SER A:542 , GLY A:543 , LYS A:544 , SER A:545 , THR A:546 , THR A:613 , VAL A:617 , MG A:902
BINDING SITE FOR RESIDUE ADP A 752
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013153 (V518I, chain A, )
2: VAR_000093 (D637G, chain A, )
3: VAR_013154 (R648Q, chain A, )
4: VAR_013173 (R659Q, chain A, )
5: VAR_047514 (Q708R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013153
V
578
I
TAP1_HUMAN
Polymorphism
41561219
A
V
518
I
2
UniProt
VAR_000093
D
697
G
TAP1_HUMAN
Polymorphism
1135216
A
D
637
G
3
UniProt
VAR_013154
R
708
Q
TAP1_HUMAN
Polymorphism
1057149
A
R
648
Q
4
UniProt
VAR_013173
R
719
Q
TAP1_HUMAN
Unclassified
121917702
A
R
659
Q
5
UniProt
VAR_047514
Q
768
R
TAP1_HUMAN
Polymorphism
1057149
A
Q
708
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (A:643-657)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
TAP1_HUMAN
703-717
1
A:643-657
[
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Exons
(5, 5)
Info
All Exons
Exon 1.48c (A:492-522)
Exon 1.49b (A:523-580)
Exon 1.50a (A:581-635)
Exon 1.50d (A:635-680)
Exon 1.52c (A:681-742)
View:
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All Exon Boundaries
1: Boundary 1.48b/1.48c
2: Boundary 1.48c/1.49b
3: Boundary 1.49b/1.50a
4: Boundary 1.50a/1.50d
5: Boundary 1.50d/1.52c
6: Boundary 1.52c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.43
ENST00000383235
43
ENSE00001770017
HSCHR6_MHC_QBL:32750465-32749526
940
TAP1_HUMAN
1-260
260
0
-
-
1.44a
ENST00000383235
44a
ENSE00001803544
HSCHR6_MHC_QBL:32748989-32748875
115
TAP1_HUMAN
260-298
39
0
-
-
1.45
ENST00000383235
45
ENSE00001769567
HSCHR6_MHC_QBL:32748726-32748596
131
TAP1_HUMAN
298-342
45
0
-
-
1.46
ENST00000383235
46
ENSE00001697273
HSCHR6_MHC_QBL:32747636-32747431
206
TAP1_HUMAN
342-410
69
0
-
-
1.47
ENST00000383235
47
ENSE00001623480
HSCHR6_MHC_QBL:32747004-32746807
198
TAP1_HUMAN
411-476
66
0
-
-
1.48b
ENST00000383235
48b
ENSE00001801886
HSCHR6_MHC_QBL:32745605-32745477
129
TAP1_HUMAN
477-519
43
0
-
-
1.48c
ENST00000383235
48c
ENSE00001704906
HSCHR6_MHC_QBL:32745327-32745139
189
TAP1_HUMAN
520-582
63
1
A:492-522
31
1.49b
ENST00000383235
49b
ENSE00001741941
HSCHR6_MHC_QBL:32744579-32744406
174
TAP1_HUMAN
583-640
58
1
A:523-580
58
1.50a
ENST00000383235
50a
ENSE00001782977
HSCHR6_MHC_QBL:32744162-32744000
163
TAP1_HUMAN
641-695
55
1
A:581-635
55
1.50d
ENST00000383235
50d
ENSE00001739907
HSCHR6_MHC_QBL:32743691-32743555
137
TAP1_HUMAN
695-740
46
1
A:635-680
46
1.52c
ENST00000383235
52c
ENSE00001861339
HSCHR6_MHC_QBL:32742272-32741696
577
TAP1_HUMAN
741-808
68
1
A:681-742
62
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jj7a_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Peptide transporter Tap1, C-terminal ABC domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1jj7a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1jj7A01 (A:500-740)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1jj7A01
A:500-740
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ABC_tran_1jj7A01 (A:545-671)
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Clans
(
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(
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Families
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(
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(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Homo sapiens (Human)
(8)
1a
ABC_tran-1jj7A01
A:545-671
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]
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Asymmetric Unit 1
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