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1JI7
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TEL SAM POLYMER
Authors
:
C. A. Kim, M. L. Phillips, W. Kim, M. Gingery, H. H. Tran, M. A. Robinson, S. Faham, J. U. Bowie
Date
:
29 Jun 01 (Deposition) - 03 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Helical Polymer, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Kim, M. L. Phillips, W. Kim, M. Gingery, H. H. Tran, M. A. Robinson, S. Faham, J. U. Bowie
Polymerization Of The Sam Domain Of Tel In Leukemogenesis And Transcriptional Repression.
Embo J. V. 20 4173 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
3
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:48 , HIS A:76 , HOH A:1064 , HOH A:1066 , ASN C:53
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
SER B:30 , ARG B:31 , ASN B:58 , HOH B:1009 , HOH B:1043 , HOH B:1073
BINDING SITE FOR RESIDUE SO4 B 1002
3
AC3
SOFTWARE
THR B:66 , GLU B:68 , ASP B:69 , HOH B:1011 , HOH B:1062 , LYS C:67 , HOH C:1020 , HOH C:1032
BINDING SITE FOR RESIDUE SO4 B 1003
4
AC4
SOFTWARE
ILE A:50 , ASP A:51 , SER A:52 , PRO C:19 , ALA C:20 , ARG C:23 , HOH C:1066
BINDING SITE FOR RESIDUE SO4 C 1004
5
AC5
SOFTWARE
ARG A:48 , LEU C:24 , GLN C:25 , TYR C:28 , ARG C:31 , ARG C:92 , HIS C:96 , HOH C:1021 , HOH C:1073
BINDING SITE FOR RESIDUE SO4 C 1005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(1, 3)
Info
All Exons
Exon 1.5 (A:15-20 | B:15-20 | C:15-20)
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000396373
2
ENSE00001696637
chr12:
11903767-11903782
16
ETV6_HUMAN
1-6
6
0
-
-
1.3
ENST00000396373
3
ENSE00001770390
chr12:
11904330-11904335
6
ETV6_HUMAN
6-8
3
0
-
-
1.4
ENST00000396373
4
ENSE00001639290
chr12:
11904772-11904779
8
ETV6_HUMAN
8-10
3
0
-
-
1.5
ENST00000396373
5
ENSE00002180215
chr12:
11905384-11905513
130
ETV6_HUMAN
11-52
42
3
A:15-20
B:15-20
C:15-20
6
6
6
1.6
ENST00000396373
6
ENSE00001803058
chr12:
11992074-11992238
165
ETV6_HUMAN
-
0
0
-
-
1.7
ENST00000396373
7
ENSE00001688954
chr12:
12006361-12006495
135
ETV6_HUMAN
-
0
0
-
-
1.8
ENST00000396373
8
ENSE00001700080
chr12:
12022358-12022903
546
ETV6_HUMAN
-
0
0
-
-
1.9
ENST00000396373
9
ENSE00001691733
chr12:
12037379-12037521
143
ETV6_HUMAN
-
0
0
-
-
1.10
ENST00000396373
10
ENSE00001595848
chr12:
12038860-12038960
101
ETV6_HUMAN
-
0
0
-
-
1.11a
ENST00000396373
11a
ENSE00001746849
chr12:
12043875-12044063
189
ETV6_HUMAN
-
0
0
-
-
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1ji7a_ (A:)
1b: SCOP_d1ji7b_ (B:)
1c: SCOP_d1ji7c_ (C:)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
SAM/Pointed domain
(61)
Family
:
Pointed domain
(12)
Protein domain
:
Etv6 transcription factor pointed domain (Tel SAM)
(5)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ji7a_
A:
1b
d1ji7b_
B:
1c
d1ji7c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1ji7A00 (A:15-91)
1b: CATH_1ji7B00 (B:15-91)
1c: CATH_1ji7C00 (C:15-99)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
Transcription Factor, Ets-1
(30)
Human (Homo sapiens)
(14)
1a
1ji7A00
A:15-91
1b
1ji7B00
B:15-91
1c
1ji7C00
C:15-99
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_SAM_PNT_1ji7C01 (C:15-91)
1b: PFAM_SAM_PNT_1ji7C02 (C:15-91)
1c: PFAM_SAM_PNT_1ji7C03 (C:15-91)
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Clans
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)
Organisms
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)
(
)
Clan
:
SAM
(26)
Family
:
SAM_PNT
(9)
Homo sapiens (Human)
(5)
1a
SAM_PNT-1ji7C01
C:15-91
1b
SAM_PNT-1ji7C02
C:15-91
1c
SAM_PNT-1ji7C03
C:15-91
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Asym.Unit (52 KB)
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