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1JH0
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
PHOTOSYNTHETIC REACTION CENTER MUTANT WITH GLU L 205 REPLACED TO LEU
Authors
:
A. Camara-Artigas, C. L. Magee, J. C. Williams, J. P. Allen
Date
:
27 Jun 01 (Deposition) - 05 Sep 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : H,L,M
Biol. Unit 1: H,L,M (1x)
Keywords
:
Alpha Helix, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Camara-Artigas, C. L. Magee, J. C. Williams, J. P. Allen
Individual Interactions Influence The Crystalline Order For Membrane Proteins.
Acta Crystallogr. , Sect. D V. 57 1281 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: BACTERIOCHLOROPHYLL A (BCLa)
1b: BACTERIOCHLOROPHYLL A (BCLb)
1c: BACTERIOCHLOROPHYLL A (BCLc)
1d: BACTERIOCHLOROPHYLL A (BCLd)
2a: BACTERIOPHEOPHYTIN A (BPHa)
2b: BACTERIOPHEOPHYTIN A (BPHb)
3a: FE (III) ION (FEa)
4a: SPHEROIDENE (SPOa)
5a: UBIQUINONE-10 (U10a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCL
4
Ligand/Ion
BACTERIOCHLOROPHYLL A
2
BPH
2
Ligand/Ion
BACTERIOPHEOPHYTIN A
3
FE
1
Ligand/Ion
FE (III) ION
4
SPO
1
Ligand/Ion
SPHEROIDENE
5
U10
1
Ligand/Ion
UBIQUINONE-10
[
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]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS L:190 , HIS L:230 , HIS M:219 , GLU M:234 , HIS M:266
BINDING SITE FOR RESIDUE FE M 856
2
AC2
SOFTWARE
HIS L:168 , MET L:174 , ILE L:177 , SER L:178 , THR L:182 , BCL L:851 , TRP M:157 , LEU M:160 , ILE M:179 , HIS M:182 , LEU M:183 , THR M:186 , BCL M:852 , BPH M:854 , SPO M:859
BINDING SITE FOR RESIDUE BCL M 850
3
AC3
SOFTWARE
PHE L:97 , ALA L:124 , ILE L:125 , ALA L:127 , TYR L:128 , VAL L:157 , TYR L:162 , PHE L:167 , HIS L:168 , HIS L:173 , ILE L:177 , PHE L:180 , SER L:244 , ALA L:245 , CYS L:247 , MET L:248 , BCL L:853 , BPH L:855 , TYR M:210 , BCL M:850 , BCL M:852
BINDING SITE FOR RESIDUE BCL L 851
4
AC4
SOFTWARE
VAL L:157 , TYR L:162 , PHE L:181 , BCL L:851 , BCL L:853 , MET M:122 , ALA M:153 , LEU M:156 , TRP M:157 , LEU M:160 , THR M:186 , ASN M:187 , PHE M:189 , LEU M:196 , PHE M:197 , HIS M:202 , SER M:205 , ILE M:206 , TYR M:210 , GLY M:280 , ILE M:284 , BCL M:850 , BPH M:854
BINDING SITE FOR RESIDUE BCL M 852
5
AC5
SOFTWARE
ILE L:46 , TYR L:128 , LEU L:131 , PHE L:146 , HIS L:153 , LEU L:154 , BCL L:851 , BPH L:855 , PHE M:197 , GLY M:203 , ILE M:206 , ALA M:207 , TYR M:210 , BCL M:852
BINDING SITE FOR RESIDUE BCL L 853
6
AC6
SOFTWARE
PHE L:181 , ALA L:184 , LEU L:185 , LEU L:189 , SER M:59 , GLY M:63 , PHE M:67 , ALA M:125 , TRP M:129 , THR M:146 , ALA M:149 , PHE M:150 , ALA M:273 , THR M:277 , BCL M:850 , BCL M:852
BINDING SITE FOR RESIDUE BPH M 854
7
AC7
SOFTWARE
PHE L:41 , ALA L:42 , GLY L:45 , ILE L:46 , PHE L:97 , TRP L:100 , GLU L:104 , ILE L:117 , ALA L:120 , PHE L:121 , TYR L:148 , HIS L:153 , LEU L:238 , VAL L:241 , BCL L:851 , BCL L:853 , TYR M:210 , ALA M:213 , LEU M:214 , TRP M:252 , MET M:256
BINDING SITE FOR RESIDUE BPH L 855
8
AC8
SOFTWARE
THR L:38 , MET M:218 , HIS M:219 , THR M:222 , ALA M:249 , TRP M:252 , MET M:256 , ASN M:259 , ALA M:260 , ILE M:265 , TRP M:268 , MET M:272
BINDING SITE FOR RESIDUE U10 M 857
9
AC9
SOFTWARE
PHE M:67 , TRP M:75 , TRP M:115 , SER M:119 , TRP M:157 , PHE M:162 , VAL M:175 , TYR M:177 , GLY M:178 , HIS M:182 , BCL M:850
BINDING SITE FOR RESIDUE SPO M 859
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REACTION_CENTER (L:166-192,L:166-192,M:195-221,M:19...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REACTION_CENTER
PS00244
Photosynthetic reaction center proteins signature.
RCEL_RHOS4
167-193
1
L:166-192
RCEL_RHOSH
167-193
1
L:166-192
RCEM_RHOS4
196-222
1
M:195-221
RCEM_RHOSH
196-222
1
M:195-221
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1jh0h1 (H:36-248)
2a: SCOP_d1jh0l_ (L:)
3a: SCOP_d1jh0m_ (M:)
4a: SCOP_d1jh0h2 (H:11-35)
View:
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Classes
(
)
(
)
Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PRC-barrel domain
(113)
Superfamily
:
PRC-barrel domain
(113)
Family
:
Photosynthetic reaction centre, H-chain, cytoplasmic domain
(108)
Protein domain
:
Photosynthetic reaction centre
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
1a
d1jh0h1
H:36-248
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Superfamily
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Family
:
Bacterial photosystem II reaction centre, L and M subunits
(187)
Protein domain
:
L (light) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
2a
d1jh0l_
L:
Protein domain
:
M (medium) subunit
(70)
Rhodobacter sphaeroides [TaxId: 1063]
(59)
3a
d1jh0m_
M:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Photosystem II reaction centre subunit H, transmembrane region
(108)
Family
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Protein domain
:
Photosystem II reaction centre subunit H, transmembrane region
(98)
Rhodobacter sphaeroides [TaxId: 1063]
(82)
4a
d1jh0h2
H:11-35
[
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]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1jh0H02 (H:117-248)
2a: CATH_1jh0H01 (H:12-116)
3a: CATH_1jh0M01 (M:1-143)
3b: CATH_1jh0M02 (M:144-301)
3c: CATH_1jh0L01 (L:1-163)
3d: CATH_1jh0L02 (L:164-263)
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)
(
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 2
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 2
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
1a
1jh0H02
H:117-248
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Photosynthetic Reaction Center; Chain H, domain 1
(93)
Homologous Superfamily
:
Photosynthetic Reaction Center, subunit H, domain 1
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
2a
1jh0H01
H:12-116
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Photosynthetic Reaction Center, subunit M; domain 1
(93)
Homologous Superfamily
:
Membrane spanning alpha-helix pairs
(93)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(10)
3a
1jh0M01
M:1-143
3b
1jh0M02
M:144-301
3c
1jh0L01
L:1-163
3d
1jh0L02
L:164-263
[
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]
Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_PRC_1jh0H01 (H:141-212)
2a: PFAM_PRCH_1jh0H02 (H:11-137)
3a: PFAM_Photo_RC_1jh0L01 (L:29-272)
3b: PFAM_Photo_RC_1jh0M01 (M:50-301)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PRC-barrel
(43)
Family
:
PRC
(42)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
1a
PRC-1jh0H01
H:141-212
Clan
:
no clan defined [family: PRCH]
(40)
Family
:
PRCH
(40)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
2a
PRCH-1jh0H02
H:11-137
Clan
:
no clan defined [family: Photo_RC]
(43)
Family
:
Photo_RC
(43)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(39)
3a
Photo_RC-1jh0L01
L:29-272
3b
Photo_RC-1jh0M01
M:50-301
[
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]
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Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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