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1JFP
Asym. Unit
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Asym.Unit (94 KB)
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(1)
Title
:
STRUCTURE OF BOVINE RHODOPSIN (DARK ADAPTED)
Authors
:
P. L. Yeagle, G. Choi, A. D. Albert
Date
:
21 Jun 01 (Deposition) - 05 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
G-Protein Coupled Receptor, Signaling Protein, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. L. Yeagle, G. Choi, A. D. Albert
Studies On The Structure Of The G-Protein-Coupled Receptor Rhodopsin Including The Putative G-Protein Binding Site In Unactivated And Activated Forms.
Biochemistry V. 40 11932 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: RETINAL (RETa)
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Label:
No.
Name
Count
Type
Full Name
1
RET
1
Ligand/Ion
RETINAL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:113 , GLY A:121 , GLU A:122 , LEU A:125 , PHE A:208 , PHE A:212 , ALA A:295 , LYS A:296
BINDING SITE FOR RESIDUE RET A 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_RECEP_F1_1 (A:123-139)
2: OPSIN (A:290-306)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_RECEP_F1_1
PS00237
G-protein coupled receptors family 1 signature.
OPSD_BOVIN
123-139
1
A:123-139
2
OPSIN
PS00238
Visual pigments (opsins) retinal binding site.
OPSD_BOVIN
290-306
1
A:290-306
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Exons
(5, 5)
Info
All Exons
Exon 1.1 (A:40-124)
Exon 1.2 (A:124-180)
Exon 1.3 (A:180-235)
Exon 1.4 (A:236-315)
Exon 1.5 (A:316-348)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000001730
1
ENSBTAE00000013842
chr22:
57733705-57733336
370
OPSD_BOVIN
1-124
124
1
A:40-124
85
1.2
ENSBTAT00000001730
2
ENSBTAE00000013843
chr22:
57731646-57731478
169
OPSD_BOVIN
124-180
57
1
A:124-180
57
1.3
ENSBTAT00000001730
3
ENSBTAE00000013844
chr22:
57730259-57730094
166
OPSD_BOVIN
180-235
56
1
A:180-235
56
1.4
ENSBTAT00000001730
4
ENSBTAE00000013845
chr22:
57729975-57729736
240
OPSD_BOVIN
236-315
80
1
A:236-315
80
1.5
ENSBTAT00000001730
5
ENSBTAE00000326840
chr22:
57728876-57728766
111
OPSD_BOVIN
316-351
36
1
A:316-348
33
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1jfpa_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Family A G protein-coupled receptor-like
(138)
Superfamily
:
Family A G protein-coupled receptor-like
(138)
Family
:
Rhodopsin-like
(16)
Protein domain
:
Rhodopsin
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
1a
d1jfpa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1jfpA00 (A:40-348)
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)
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)
Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Homologous Superfamily
:
Rhopdopsin 7-helix transmembrane proteins
(128)
Cattle (Bos taurus)
(9)
1a
1jfpA00
A:40-348
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_7tm_1_1jfpA01 (A:54-306)
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Clan
:
GPCR_A
(90)
Family
:
7tm_1
(47)
Bos taurus (Bovine)
(9)
1a
7tm_1-1jfpA01
A:54-306
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Chain A
Asymmetric Unit 1
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