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Asym. Unit
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Asym.Unit (143 KB)
Biol.Unit 1 (137 KB)
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(1)
Title
:
REFINED STRUCTURE OF ALPHA-BETA TUBULIN FROM ZINC-INDUCED SHEETS STABILIZED WITH TAXOL
Authors
:
J. Lowe, H. Li, K. H. Downing, E. Nogales
Date
:
20 Jun 01 (Deposition) - 19 Sep 01 (Release) - 11 Jun 14 (Revision)
Method
:
ELECTRON CRYSTALLOGRAPHY
Resolution
:
3.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dimer, Gtpase, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Lowe, H. Li, K. H. Downing, E. Nogales
Refined Structure Of Alpha Beta-Tubulin At 3. 5 A Resolution
J. Mol. Biol. V. 313 1045 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 5)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3a: MAGNESIUM ION (MGa)
4a: TAXOL (TA1a)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
TA1
1
Ligand/Ion
TAXOL
5
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:283
BINDING SITE FOR RESIDUE ZN A 900
2
AC2
SOFTWARE
GLN A:11 , GLU A:71 , GTP A:500
BINDING SITE FOR RESIDUE MG A 501
3
AC3
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , ILE A:171 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:501 , LEU B:248 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 500
4
AC4
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:142 , GLY B:144 , THR B:145 , GLY B:146 , ASP B:179 , ASN B:206 , TYR B:224 , ASN B:228
BINDING SITE FOR RESIDUE GDP B 600
5
AC5
SOFTWARE
VAL B:23 , ASP B:26 , GLU B:27 , HIS B:229 , LEU B:230 , ALA B:233 , SER B:236 , PHE B:272 , PRO B:274 , LEU B:275 , THR B:276 , ARG B:278 , PRO B:360 , ARG B:369 , GLY B:370
BINDING SITE FOR RESIDUE TA1 B 601
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TBB_PIG_001 (H37V, chain B, )
2: VAR_TBB_PIG_002 (N50S, chain B, )
3: VAR_TBB_PIG_003 (S277A, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TBB_PIG_001
*
H
37
V
TBB_PIG
---
---
B
H
37
V
2
UniProt
VAR_TBB_PIG_002
*
N
48
S
TBB_PIG
---
---
B
N
50
S
3
UniProt
VAR_TBB_PIG_003
*
S
275
A
TBB_PIG
---
---
B
S
277
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TUBULIN (B:142-148,A:142-148)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB_PIG
140-146
1
B:142-148
TBA1D_BOVIN
142-148
1
A:142-148
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1jffa2 (A:246-439)
2a: SCOP_d1jffb2 (B:246-437)
3a: SCOP_d1jffa1 (A:2-245)
4a: SCOP_d1jffb1 (B:2-245)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
Tubulin alpha-subunit
(10)
Cow (Bos taurus) [TaxId: 9913]
(5)
1a
d1jffa2
A:246-439
Protein domain
:
Tubulin beta-subunit
(8)
Cow (Bos taurus) [TaxId: 9913]
(5)
2a
d1jffb2
B:246-437
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
Tubulin alpha-subunit
(9)
Cow (Bos taurus) [TaxId: 9913]
(4)
3a
d1jffa1
A:2-245
Protein domain
:
Tubulin beta-subunit
(8)
Cow (Bos taurus) [TaxId: 9913]
(5)
4a
d1jffb1
B:2-245
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1jffB02 (B:262-383)
1b: CATH_1jffA02 (A:269-383)
2a: CATH_1jffA01 (A:2-268)
2b: CATH_1jffB01 (B:2-261)
3a: CATH_1jffA03 (A:384-439)
3b: CATH_1jffB03 (B:384-437)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
60s Ribosomal Protein L30; Chain: A;
(235)
Homologous Superfamily
:
[code=3.30.1330.20, no name defined]
(18)
Cattle (Bos taurus)
(4)
1a
1jffB02
B:262-383
1b
1jffA02
A:269-383
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1440, no name defined]
(23)
Cattle (Bos taurus)
(4)
2a
1jffA01
A:2-268
2b
1jffB01
B:2-261
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(5)
Cattle (Bos taurus)
(4)
3a
1jffA03
A:384-439
3b
1jffB03
B:384-437
[
close CATH info
]
Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_Tubulin_1jffA01 (A:3-226)
2a: PFAM_Tubulin_1jffB01 (B:3-226)
3a: PFAM_Tubulin_C_1jffA02 (A:263-393)
4a: PFAM_Tubulin_C_1jffB02 (B:263-393)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tubulin-like
(34)
Family
:
Tubulin
(34)
Bos taurus (Bovine)
(7)
1a
Tubulin-1jffA01
A:3-226
Sus scrofa (Pig)
(3)
2a
Tubulin-1jffB01
B:3-226
Family
:
Tubulin_C
(11)
Bos taurus (Bovine)
(7)
3a
Tubulin_C-1jffA02
A:263-393
Sus scrofa (Pig)
(3)
4a
Tubulin_C-1jffB02
B:263-393
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]
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Asymmetric Unit 1
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